Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD018851

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts (cysts)
PRIDE accessionPXD018851
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1386
Peptides (q≤0.01)4672
PSMs (q≤0.01)6643
reprocessed against the CnidoSite reference proteome
30 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0000123.1 MHONG_EVM0000123.1 9 8 29.1 361 0.000289436 gene=EVM0000123
EVM0012656.1 MHONG_EVM0012656.1 9 8 35.3 173 0.000289436 gene=EVM0012656
KII68221.1 TKITA_KII68221.1 9 8 32 269 0.000289436 Protein-glutamine gamma-glutamyltransferase 5 [Thelohanellus kitauei]
EVM0003016.1 MHONG_EVM0003016.1 8 8 25.8 252 0.000289436 gene=EVM0003016
EVM0006944.1 MHONG_EVM0006944.1 8 8 19.9 402 0.000289436 gene=EVM0006944
EVM0010247.1 MHONG_EVM0010247.1 8 8 22.4 402 0.000289436 gene=EVM0010247
EVM0010658.1 MHONG_EVM0010658.1 8 8 15.5 440 0.000289436 gene=EVM0010658
EVM0013154.1 MHONG_EVM0013154.1 8 8 28.7 328 0.000289436 gene=EVM0013154
KII74399.1 TKITA_KII74399.1 8 8 24.9 358 0.000289436 Low-density lipoprotein receptor-related protein 2 [Thelohanellus kitauei]
KII69490.1 TKITA_KII69490.1 22 7 42.7 150 0.000289436 Cytoplasmic polyadenylation element-binding protein 4 [Thelohanellus kitauei]
KII67957.1 TKITA_KII67957.1 19 7 50 144 0.000289436 Superoxide dismutase [Cu-Zn] [Thelohanellus kitauei]
EVM0007953.1 MHONG_EVM0007953.1 16 7 27.6 322 0.000289436 gene=EVM0007953
KII68306.1 TKITA_KII68306.1 16 7 39.7 141 0.000289436 hypothetical protein RF11_06748 [Thelohanellus kitauei]
EVM0005628.1 MHONG_EVM0005628.1 14 7 29.7 279 0.000289436 gene=EVM0005628
KII66145.1 TKITA_KII66145.1 13 7 18.6 291 0.000289436 Kelch domain-containing protein 10 [Thelohanellus kitauei]
KII68477.1 TKITA_KII68477.1 12 7 24.1 212 0.000289436 hypothetical protein RF11_06915 [Thelohanellus kitauei]
EVM0000369.1 MHONG_EVM0000369.1 11 7 29 241 0.000289436 gene=EVM0000369
EVM0003737.1 MHONG_EVM0003737.1 11 7 7.4 678 0.000289436 gene=EVM0003737
EVM0002014.1 MHONG_EVM0002014.1 10 7 29.2 195 0.000289436 gene=EVM0002014
EVM0002175.1 MHONG_EVM0002175.1 10 7 12 598 0.000289436 gene=EVM0002175
EVM0004688.1 MHONG_EVM0004688.1 10 7 41.7 211 0.000289436 gene=EVM0004688
EVM0003007.1 MHONG_EVM0003007.1 9 7 24.3 350 0.000289436 gene=EVM0003007
EVM0004107.1 MHONG_EVM0004107.1 9 7 12.6 672 0.000289436 gene=EVM0004107
EVM0006576.1 MHONG_EVM0006576.1 9 7 9.5 790 0.000289436 gene=EVM0006576
EVM0010030.1 MHONG_EVM0010030.1 9 7 24.7 340 0.000289436 gene=EVM0010030
Total protein records: 1386  (+30 contaminants hidden)
Show: proteins per page
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