Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD018851

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts (cysts)
PRIDE accessionPXD018851
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1386
Peptides (q≤0.01)4672
PSMs (q≤0.01)6643
reprocessed against the CnidoSite reference proteome
30 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KII61310.1 TKITA_KII61310.1 9 7 28.1 302 0.000289436 hypothetical protein RF11_06474 [Thelohanellus kitauei]
EVM0001321.1 MHONG_EVM0001321.1 8 7 14.1 538 0.000289436 gene=EVM0001321
EVM0001582.1 MHONG_EVM0001582.1 8 7 13 553 0.000289436 gene=EVM0001582
EVM0013625.1 MHONG_EVM0013625.1 8 7 34 203 0.000289436 gene=EVM0013625
KII61911.1 TKITA_KII61911.1 8 7 16.3 571 0.000289436 Alpha-1-antitrypsin [Thelohanellus kitauei]
EVM0002063.1 MHONG_EVM0002063.1 7 7 21.7 355 0.000289436 gene=EVM0002063
EVM0002160.1 MHONG_EVM0002160.1 7 7 20.8 361 0.000289436 gene=EVM0002160
EVM0002485.1 MHONG_EVM0002485.1 7 7 59.5 173 0.000289436 gene=EVM0002485
EVM0002739.1 MHONG_EVM0002739.1 7 7 20.1 349 0.000289436 gene=EVM0002739
EVM0003710.1 MHONG_EVM0003710.1 7 7 14.9 469 0.000289436 gene=EVM0003710
EVM0006176.1 MHONG_EVM0006176.1 7 7 22.3 323 0.000289436 gene=EVM0006176
EVM0007238.1 MHONG_EVM0007238.1 7 7 22.3 327 0.000289436 gene=EVM0007238
EVM0007341.1 MHONG_EVM0007341.1 7 7 18.8 320 0.000289436 gene=EVM0007341
EVM0007480.1 MHONG_EVM0007480.1 7 7 10.3 787 0.000289436 gene=EVM0007480
EVM0010911.1 MHONG_EVM0010911.1 7 7 15.7 479 0.000289436 gene=EVM0010911
EVM0012765.1 MHONG_EVM0012765.1 7 7 37.4 214 0.000289436 gene=EVM0012765
KII68347.1 TKITA_KII68347.1 7 7 28.3 304 0.000289436 hypothetical protein RF11_06791 [Thelohanellus kitauei]
KII60821.1 TKITA_KII60821.1 26 6 41.8 141 0.000289436 hypothetical protein RF11_07111 [Thelohanellus kitauei]
KII73406.1 TKITA_KII73406.1 21 6 26.7 206 0.000289436 Zinc homeostasis factor 1 [Thelohanellus kitauei]
EVM0011902.1 MHONG_EVM0011902.1 19 6 32.8 235 0.000289436 gene=EVM0011902
EVM0002258.1 MHONG_EVM0002258.1 16 6 39.7 179 0.000289436 gene=EVM0002258
EVM0011785.1 MHONG_EVM0011785.1 16 6 49.5 457 0.000289436 gene=EVM0011785
KII70196.1 TKITA_KII70196.1 15 6 26.5 291 0.000289436 Stromal membrane-associated protein 2 [Thelohanellus kitauei]
EVM0009364.1 MHONG_EVM0009364.1 14 6 13.8 552 0.000289436 gene=EVM0009364
EVM0013244.1 MHONG_EVM0013244.1 14 6 19.9 151 0.000289436 gene=EVM0013244
Total protein records: 1386  (+30 contaminants hidden)
Show: proteins per page
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