Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD018851

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts (cysts)
PRIDE accessionPXD018851
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1386
Peptides (q≤0.01)4672
PSMs (q≤0.01)6643
reprocessed against the CnidoSite reference proteome
30 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KII70192.1 TKITA_KII70192.1 7 6 17.2 511 0.000289436 hypothetical protein RF11_01647 [Thelohanellus kitauei]
EVM0000042.1 MHONG_EVM0000042.1 6 6 15.7 508 0.000289436 gene=EVM0000042
EVM0000662.1 MHONG_EVM0000662.1 6 6 18.6 371 0.000289436 gene=EVM0000662
EVM0005989.1 MHONG_EVM0005989.1 6 6 34.1 246 0.000289436 gene=EVM0005989
EVM0006162.1 MHONG_EVM0006162.1 6 6 14.9 683 0.000289436 gene=EVM0006162
EVM0008503.1 MHONG_EVM0008503.1 6 6 20.5 322 0.000289436 gene=EVM0008503
EVM0008792.1 MHONG_EVM0008792.1 6 6 11.7 369 0.000289436 gene=EVM0008792
EVM0010891.1 MHONG_EVM0010891.1 6 6 23 191 0.000289436 gene=EVM0010891
EVM0011510.1 MHONG_EVM0011510.1 6 6 5.9 1087 0.000289436 gene=EVM0011510
EVM0012850.1 MHONG_EVM0012850.1 6 6 19.8 197 0.000289436 gene=EVM0012850
EVM0013673.1 MHONG_EVM0013673.1 6 6 19.6 271 0.000289436 gene=EVM0013673
KII62448.1 TKITA_KII62448.1 6 6 12.7 482 0.000289436 Endoplasmic reticulum aminopeptidase 1 [Thelohanellus kitauei]
KII65897.1 TKITA_KII65897.1 6 6 17 294 0.000289436 Carboxypeptidase D [Thelohanellus kitauei]
EVM0005420.1 MHONG_EVM0005420.1 26 5 51 102 0.000289436 gene=EVM0005420
EVM0004165.1 MHONG_EVM0004165.1 11 5 39.6 134 0.000289436 gene=EVM0004165
KII67931.1 TKITA_KII67931.1 11 5 12.4 386 0.000289436 hypothetical protein RF11_08291 [Thelohanellus kitauei]
KII72934.1 TKITA_KII72934.1 11 5 21.1 270 0.000289436 hypothetical protein RF11_12302 [Thelohanellus kitauei]
EVM0015358.1 MHONG_EVM0015358.1 10 5 6 301 0.000289436 gene=EVM0015358
KII70074.1 TKITA_KII70074.1 10 5 51.9 106 0.000289436 Vigilin [Thelohanellus kitauei]
EVM0004360.1 MHONG_EVM0004360.1 9 5 28 211 0.000289436 gene=EVM0004360
EVM0010154.1 MHONG_EVM0010154.1 9 5 24.8 214 0.000289436 gene=EVM0010154
EVM0012688.1 MHONG_EVM0012688.1 9 5 56 134 0.000289436 gene=EVM0012688
EVM0013928.1 MHONG_EVM0013928.1 9 5 17.6 159 0.000289436 gene=EVM0013928
EVM0002824.1 MHONG_EVM0002824.1 8 5 4.4 1456 0.000289436 gene=EVM0002824
EVM0008431.1 MHONG_EVM0008431.1 8 5 18.9 233 0.000289436 gene=EVM0008431
Total protein records: 1386  (+30 contaminants hidden)
Show: proteins per page
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