Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD020332

SpeciesCorallium rubrum
TissueCoral skeleton
PRIDE accessionPXD020332
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Corallium_rubrum.rep.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance20 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins108
Peptides (q≤0.01)523
PSMs (q≤0.01)3703
reprocessed against the CnidoSite reference proteome
9 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN7750_c0_g1 TRINITY_DN7750_c0_g1_i1.p1 28 5 21 167 0.00233645
TRINITY_DN6700_c0_g1 TRINITY_DN6700_c0_g1_i3.p2 26 5 14.4 375 0.00233645
TRINITY_DN107_c0_g1 TRINITY_DN107_c0_g1_i1.p1 23 5 14.3 497 0.00233645
TRINITY_DN14591_c0_g1 TRINITY_DN14591_c0_g1_i1.p2 22 5 10.9 421 0.00233645
TRINITY_DN7462_c0_g1 TRINITY_DN7462_c0_g1_i4.p1 18 5 12.7 410 0.00233645
TRINITY_DN18281_c0_g1 TRINITY_DN18281_c0_g1_i1.p1 42 4 19.7 203 0.00233645
TRINITY_DN3660_c0_g1 TRINITY_DN3660_c0_g1_i1.p1 21 4 3 1377 0.00233645
TRINITY_DN2890_c0_g1 TRINITY_DN2890_c0_g1_i1.p1 20 4 2.2 1751 0.00233645
TRINITY_DN6878_c1_g1 TRINITY_DN6878_c1_g1_i1.p1 19 4 16.1 305 0.00233645
TRINITY_DN2449_c0_g1 TRINITY_DN2449_c0_g1_i4.p2 16 4 5.8 724 0.00233645
TRINITY_DN2880_c0_g1 TRINITY_DN2880_c0_g1_i1.p1 14 4 2.5 1665 0.00233645
TRINITY_DN4332_c0_g1 TRINITY_DN4332_c0_g1_i1.p1 14 4 20 265 0.00233645
TRINITY_DN3489_c0_g1 TRINITY_DN3489_c0_g1_i1.p1 11 4 34.3 169 0.00233645
TRINITY_DN21706_c0_g1 TRINITY_DN21706_c0_g1_i1.p1 5 4 10.8 399 0.00436681
TRINITY_DN3826_c0_g1 TRINITY_DN3826_c0_g1_i4.p1 47 3 16.3 288 0.00233645
TRINITY_DN16338_c0_g1 TRINITY_DN16338_c0_g1_i1.p1 39 3 14 235 0.00233645
TRINITY_DN23790_c0_g1 TRINITY_DN23790_c0_g1_i1.p1 22 3 16.9 201 0.00233645
TRINITY_DN239_c0_g1 TRINITY_DN239_c0_g1_i1.p1 15 3 4.2 783 0.00233645
TRINITY_DN6370_c1_g1 TRINITY_DN6370_c1_g1_i1.p1 14 3 2 1414 0.00233645
TRINITY_DN1285_c0_g1 TRINITY_DN1285_c0_g1_i1.p1 13 3 22.6 146 0.00233645
TRINITY_DN19057_c0_g2 TRINITY_DN19057_c0_g2_i1.p1 7 3 22.3 157 0.00233645
TRINITY_DN7210_c1_g1 TRINITY_DN7210_c1_g1_i1.p1 6 3 10.5 305 0.00233645
TRINITY_DN3500_c0_g1 TRINITY_DN3500_c0_g1_i6.p1 5 3 23.1 121 0.00233645
TRINITY_DN11036_c0_g1 TRINITY_DN11036_c0_g1_i1.p1 24 2 46.8 109 0.00233645
TRINITY_DN14241_c0_g1 TRINITY_DN14241_c0_g1_i1.p1 19 2 21.5 107 0.00233645
Total protein records: 108  (+9 contaminants hidden)
Show: proteins per page
« First ‹ Previous 1 2 3 4 5 Next › Last » of 5 pages
TOP