Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD022770

SpeciesCeratonova shasta
TissueDevelopmental stages (in Ascites fluid)
PRIDE accessionPXD022770
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Ceratonova_shasta.rep.pep
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949,n+42.010565
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins2239
Peptides (q≤0.01)12107
PSMs (q≤0.01)103880
reprocessed against the CnidoSite reference proteome
41 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN6323_c5_g1 TRINITY_DN6323_c5_g1_i2.p1 209 19 48.1 187 0.000124719
TRINITY_DN484_c0_g3 TRINITY_DN484_c0_g3_i1.p1 183 19 42 212 0.000124719
TRINITY_DN14001_c0_g1 TRINITY_DN14001_c0_g1_i3.p1 179 19 49.5 192 0.000124719
TRINITY_DN15654_c0_g1 TRINITY_DN15654_c0_g1_i1.p1 175 19 67.3 208 0.000124719
TRINITY_DN15988_c0_g1 TRINITY_DN15988_c0_g1_i1.p2 164 19 81.6 87 0.000124719
TRINITY_DN29426_c0_g1 TRINITY_DN29426_c0_g1_i1.p1 162 19 72.6 190 0.000124719
TRINITY_DN26513_c0_g1 TRINITY_DN26513_c0_g1_i1.p1 160 19 65.9 132 0.000124719
TRINITY_DN1349_c0_g4 TRINITY_DN1349_c0_g4_i3.p1 115 19 59.7 134 0.000124719
TRINITY_DN12091_c0_g1 TRINITY_DN12091_c0_g1_i1.p1 85 19 90.8 130 0.000124719
TRINITY_DN10900_c0_g1 TRINITY_DN10900_c0_g1_i1.p1 253 18 53.5 170 0.000124719
TRINITY_DN18163_c0_g1 TRINITY_DN18163_c0_g1_i3.p1 219 18 44.1 186 0.000124719
TRINITY_DN6862_c1_g1 TRINITY_DN6862_c1_g1_i8.p1 213 18 48.4 320 0.000124719
TRINITY_DN8014_c0_g1 TRINITY_DN8014_c0_g1_i2.p1 180 18 66.5 212 0.000124719
TRINITY_DN2574_c0_g1 TRINITY_DN2574_c0_g1_i47.p1 179 18 65.4 205 0.000124719
TRINITY_DN10522_c0_g1 TRINITY_DN10522_c0_g1_i1.p1 159 18 74.3 171 0.000124719
TRINITY_DN806_c0_g1 TRINITY_DN806_c0_g1_i13.p1 138 18 61.2 258 0.000124719
TRINITY_DN5414_c0_g1 TRINITY_DN5414_c0_g1_i1.p1 88 18 65.6 215 0.000124719
TRINITY_DN4197_c1_g1 TRINITY_DN4197_c1_g1_i12.p1 331 17 60.2 186 0.000124719
TRINITY_DN4571_c0_g2 TRINITY_DN4571_c0_g2_i1.p1 298 17 84 162 0.000124719
TRINITY_DN10191_c0_g1 TRINITY_DN10191_c0_g1_i4.p2 274 17 84 181 0.000124719
TRINITY_DN43709_c0_g1 TRINITY_DN43709_c0_g1_i2.p2 248 17 70.5 139 0.000124719
TRINITY_DN147_c6_g1 TRINITY_DN147_c6_g1_i5.p1 203 17 56.2 146 0.000124719
TRINITY_DN10_c0_g1 TRINITY_DN10_c0_g1_i4.p1 194 17 41 178 0.000124719
TRINITY_DN1465_c2_g1 TRINITY_DN1465_c2_g1_i12.p1 179 17 57.7 123 0.000124719
TRINITY_DN8891_c0_g1 TRINITY_DN8891_c0_g1_i2.p1 178 17 50 204 0.000124719
Total protein records: 2239  (+41 contaminants hidden)
Show: proteins per page
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