Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.
| Gene | Protein | PSMs | Unique peptides | Coverage (%) | Length | Best q-value | Description |
|---|---|---|---|---|---|---|---|
| TRINITY_DN3017_c0_g3 | TRINITY_DN3017_c0_g3_i11.p1 | 1 | 1 | 11.8 | 110 | 0.000124719 | |
| TRINITY_DN3070_c0_g1 | TRINITY_DN3070_c0_g1_i7.p1 | 1 | 1 | 14.3 | 133 | 0.000124719 | |
| TRINITY_DN3185_c0_g1 | TRINITY_DN3185_c0_g1_i11.p1 | 1 | 1 | 5.9 | 169 | 0.00991572 | |
| TRINITY_DN3198_c0_g1 | TRINITY_DN3198_c0_g1_i2.p1 | 1 | 1 | 6.6 | 136 | 0.00826515 | |
| TRINITY_DN3283_c0_g1 | TRINITY_DN3283_c0_g1_i2.p1 | 1 | 1 | 11.6 | 121 | 0.000124719 | |
| TRINITY_DN3385_c0_g1 | TRINITY_DN3385_c0_g1_i3.p1 | 1 | 1 | 4.3 | 115 | 0.0088179 | |
| TRINITY_DN3559_c1_g3 | TRINITY_DN3559_c1_g3_i4.p1 | 1 | 1 | 11.4 | 114 | 0.000124719 | |
| TRINITY_DN3714_c0_g1 | TRINITY_DN3714_c0_g1_i4.p1 | 1 | 1 | 11.4 | 105 | 0.000124719 | |
| TRINITY_DN3727_c0_g1 | TRINITY_DN3727_c0_g1_i8.p1 | 1 | 1 | 0 | 111 | 0.00770648 | |
| TRINITY_DN384_c0_g1 | TRINITY_DN384_c0_g1_i5.p2 | 1 | 1 | 9.3 | 118 | 0.000124719 | |
| TRINITY_DN3846_c0_g2 | TRINITY_DN3846_c0_g2_i3.p3 | 1 | 1 | 10 | 130 | 0.000124719 | |
| TRINITY_DN38989_c0_g1 | TRINITY_DN38989_c0_g1_i3.p1 | 1 | 1 | 5.7 | 122 | 0.00256528 | |
| TRINITY_DN3918_c0_g1 | TRINITY_DN3918_c0_g1_i11.p1 | 1 | 1 | 6.9 | 144 | 0.000124719 | |
| TRINITY_DN39239_c0_g1 | TRINITY_DN39239_c0_g1_i1.p1 | 1 | 1 | 6.8 | 146 | 0.000124719 | |
| TRINITY_DN39469_c0_g1 | TRINITY_DN39469_c0_g1_i6.p1 | 1 | 1 | 13.1 | 107 | 0.000124719 | |
| TRINITY_DN39581_c0_g1 | TRINITY_DN39581_c0_g1_i1.p1 | 1 | 1 | 5.8 | 120 | 0.000220897 | |
| TRINITY_DN3991_c0_g1 | TRINITY_DN3991_c0_g1_i7.p1 | 1 | 1 | 12.1 | 140 | 0.000220897 | |
| TRINITY_DN4026_c0_g3 | TRINITY_DN4026_c0_g3_i4.p1 | 1 | 1 | 12.5 | 104 | 0.000124719 | |
| TRINITY_DN4114_c0_g1 | TRINITY_DN4114_c0_g1_i8.p1 | 1 | 1 | 5 | 161 | 0.00589341 | |
| TRINITY_DN4196_c0_g1 | TRINITY_DN4196_c0_g1_i2.p2 | 1 | 1 | 8.6 | 140 | 0.000124719 | |
| TRINITY_DN4201_c0_g3 | TRINITY_DN4201_c0_g3_i1.p1 | 1 | 1 | 6.3 | 111 | 0.00991572 | |
| TRINITY_DN42256_c0_g2 | TRINITY_DN42256_c0_g2_i1.p1 | 1 | 1 | 14.3 | 168 | 0.00160817 | |
| TRINITY_DN43_c0_g1 | TRINITY_DN43_c0_g1_i25.p1 | 1 | 1 | 7.8 | 167 | 0.000124719 | |
| TRINITY_DN4312_c0_g3 | TRINITY_DN4312_c0_g3_i2.p1 | 1 | 1 | 5 | 201 | 0.00499483 | |
| TRINITY_DN438_c0_g1 | TRINITY_DN438_c0_g1_i6.p1 | 1 | 1 | 7.5 | 186 | 0.000220897 |
