Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0010891.1 MHONG_EVM0010891.1 21 7 23 191 0.000254065 gene=EVM0010891
EVM0002160.1 MHONG_EVM0002160.1 20 7 20.8 361 0.000254065 gene=EVM0002160
KII69402.1 TKITA_KII69402.1 20 7 12.2 599 0.000254065 hypothetical protein RF11_11046 [Thelohanellus kitauei]
EVM0008792.1 MHONG_EVM0008792.1 19 7 13.8 369 0.000254065 gene=EVM0008792
EVM0004673.1 MHONG_EVM0004673.1 18 7 37.6 133 0.000254065 gene=EVM0004673
EVM0000042.1 MHONG_EVM0000042.1 17 7 15.7 508 0.000254065 gene=EVM0000042
EVM0005379.1 MHONG_EVM0005379.1 17 7 8 1117 0.000254065 gene=EVM0005379
EVM0006596.1 MHONG_EVM0006596.1 17 7 24.6 285 0.000254065 gene=EVM0006596
EVM0007341.1 MHONG_EVM0007341.1 16 7 18.8 320 0.000254065 gene=EVM0007341
EVM0009593.1 MHONG_EVM0009593.1 16 7 44.6 139 0.000254065 gene=EVM0009593
EVM0011744.1 MHONG_EVM0011744.1 16 7 50 148 0.000254065 gene=EVM0011744
KII60760.1 TKITA_KII60760.1 15 7 20.6 379 0.000254065 Vacuolar protein sorting-associated protein 33B [Thelohanellus kitauei]
EVM0004206.2 MHONG_EVM0004206.2 14 7 11.3 697 0.000254065 gene=EVM0004206
EVM0000251.1 MHONG_EVM0000251.1 13 7 26.1 253 0.000254065 gene=EVM0000251
EVM0001372.1 MHONG_EVM0001372.1 13 7 9.8 716 0.000254065 gene=EVM0001372
EVM0006162.1 MHONG_EVM0006162.1 13 7 17 683 0.000254065 gene=EVM0006162
EVM0012983.1 MHONG_EVM0012983.1 13 7 14.5 530 0.000254065 gene=EVM0012983
EVM0004193.1 MHONG_EVM0004193.1 12 7 25.3 344 0.000254065 gene=EVM0004193
EVM0006430.1 MHONG_EVM0006430.1 12 7 15.4 520 0.000254065 gene=EVM0006430
EVM0009296.1 MHONG_EVM0009296.1 12 7 56.3 151 0.000254065 gene=EVM0009296
EVM0009767.1 MHONG_EVM0009767.1 12 7 20.6 432 0.000254065 gene=EVM0009767
EVM0011808.1 MHONG_EVM0011808.1 12 7 19.5 569 0.000254065 gene=EVM0011808
EVM0012557.1 MHONG_EVM0012557.1 12 7 18.3 546 0.000254065 gene=EVM0012557
EVM0014422.1 MHONG_EVM0014422.1 12 7 18.5 578 0.000254065 gene=EVM0014422
KII73084.1 TKITA_KII73084.1 12 7 24.4 353 0.000254065 40S ribosomal protein S7 [Thelohanellus kitauei]
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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