Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KII60349.1 TKITA_KII60349.1 111 18 38.1 491 0.000254065 hypothetical protein RF11_04809 [Thelohanellus kitauei]
EVM0005620.1 MHONG_EVM0005620.1 76 18 38 498 0.000254065 gene=EVM0005620
KII61271.1 TKITA_KII61271.1 72 18 50.4 357 0.000254065 hypothetical protein RF11_03067 [Thelohanellus kitauei]
EVM0000288.1 MHONG_EVM0000288.1 54 18 50.3 384 0.000254065 gene=EVM0000288
EVM0000102.1 MHONG_EVM0000102.1 49 18 24.1 873 0.000254065 gene=EVM0000102
EVM0011116.1 MHONG_EVM0011116.1 48 18 39.6 659 0.000254065 gene=EVM0011116
EVM0008589.1 MHONG_EVM0008589.1 45 18 38.3 562 0.000254065 gene=EVM0008589
EVM0001051.1 MHONG_EVM0001051.1 41 18 13.3 1793 0.000254065 gene=EVM0001051
EVM0000416.1 MHONG_EVM0000416.1 146 17 19.2 828 0.000254065 gene=EVM0000416
EVM0010287.1 MHONG_EVM0010287.1 65 17 38.8 466 0.000254065 gene=EVM0010287
EVM0001353.1 MHONG_EVM0001353.1 59 17 42.3 426 0.000254065 gene=EVM0001353
EVM0006502.1 MHONG_EVM0006502.1 52 17 34.7 527 0.000254065 gene=EVM0006502
EVM0015042.1 MHONG_EVM0015042.1 48 17 47.5 400 0.000254065 gene=EVM0015042
EVM0011637.1 MHONG_EVM0011637.1 46 17 27.8 709 0.000254065 gene=EVM0011637
EVM0012184.1 MHONG_EVM0012184.1 45 17 24.9 908 0.000254065 gene=EVM0012184
EVM0000898.1 MHONG_EVM0000898.1 43 17 39.4 470 0.000254065 gene=EVM0000898
EVM0010652.1 MHONG_EVM0010652.1 59 16 52.8 356 0.000254065 gene=EVM0010652
EVM0000556.1 MHONG_EVM0000556.1 51 16 32.8 536 0.000254065 gene=EVM0000556
EVM0001716.1 MHONG_EVM0001716.1 51 16 6.6 2075 0.000254065 gene=EVM0001716
EVM0004499.1 MHONG_EVM0004499.1 46 16 34.2 511 0.000254065 gene=EVM0004499
EVM0000886.1 MHONG_EVM0000886.1 43 16 37.1 510 0.000254065 gene=EVM0000886
EVM0007165.1 MHONG_EVM0007165.1 28 16 20.6 878 0.000254065 gene=EVM0007165
EVM0005674.1 MHONG_EVM0005674.1 54 15 61.7 360 0.000254065 gene=EVM0005674
EVM0002313.1 MHONG_EVM0002313.1 38 15 15.2 938 0.000254065 gene=EVM0002313
EVM0003235.1 MHONG_EVM0003235.1 37 15 41.7 458 0.000254065 gene=EVM0003235
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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