Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0004729.1 MHONG_EVM0004729.1 37 15 27.9 573 0.000254065 gene=EVM0004729
EVM0003243.1 MHONG_EVM0003243.1 35 15 18.6 834 0.000254065 gene=EVM0003243
EVM0012002.1 MHONG_EVM0012002.1 34 15 24.6 857 0.000254065 gene=EVM0012002
EVM0015284.1 MHONG_EVM0015284.1 34 15 16.5 1132 0.000254065 gene=EVM0015284
EVM0011168.1 MHONG_EVM0011168.1 33 15 32.5 504 0.000254065 gene=EVM0011168
KII60969.1 TKITA_KII60969.1 30 15 30.3 689 0.000254065 Mitochondrial inner membrane protease subunit 1 [Thelohanellus kitauei]
EVM0006083.1 MHONG_EVM0006083.1 28 15 26.7 663 0.000254065 gene=EVM0006083
EVM0001048.1 MHONG_EVM0001048.1 107 14 45.4 315 0.000254065 gene=EVM0001048
EVM0008509.1 MHONG_EVM0008509.1 53 14 58 224 0.000254065 gene=EVM0008509
EVM0009793.1 MHONG_EVM0009793.1 49 14 28.1 662 0.000254065 gene=EVM0009793
EVM0008981.1 MHONG_EVM0008981.1 48 14 28.5 519 0.000254065 gene=EVM0008981
EVM0010297.1 MHONG_EVM0010297.1 45 14 23.4 593 0.000254065 gene=EVM0010297
KII61441.1 TKITA_KII61441.1 40 14 27.6 536 0.000254065 hypothetical protein RF11_12856 [Thelohanellus kitauei]
KII61323.1 TKITA_KII61323.1 30 14 22.2 694 0.000254065 hypothetical protein RF11_15580 [Thelohanellus kitauei]
EVM0005807.1 MHONG_EVM0005807.1 29 14 9.5 1595 0.000254065 gene=EVM0005807
KII63280.1 TKITA_KII63280.1 81 13 33.3 516 0.000254065 hypothetical protein RF11_01887 [Thelohanellus kitauei]
EVM0004778.1 MHONG_EVM0004778.1 55 13 9.5 1551 0.000254065 gene=EVM0004778
EVM0007296.1 MHONG_EVM0007296.1 52 13 11.9 826 0.000254065 gene=EVM0007296
KII70048.1 TKITA_KII70048.1 48 13 23.9 469 0.000254065 hypothetical protein RF11_08527 [Thelohanellus kitauei]
EVM0001610.1 MHONG_EVM0001610.1 41 13 18.8 762 0.000254065 gene=EVM0001610
EVM0014398.1 MHONG_EVM0014398.1 39 13 39 428 0.000254065 gene=EVM0014398
EVM0003010.1 MHONG_EVM0003010.1 35 13 37.9 314 0.000254065 gene=EVM0003010
EVM0006288.1 MHONG_EVM0006288.1 32 13 15.4 987 0.000254065 gene=EVM0006288
EVM0002710.1 MHONG_EVM0002710.1 29 13 7.7 1867 0.000254065 gene=EVM0002710
EVM0006944.1 MHONG_EVM0006944.1 27 13 36.6 402 0.000254065 gene=EVM0006944
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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