Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0003818.1 MHONG_EVM0003818.1 2 1 2.2 495 0.0019507 gene=EVM0003818
EVM0003826.1 MHONG_EVM0003826.1 2 1 6.9 217 0.000475511 gene=EVM0003826
EVM0004356.1 MHONG_EVM0004356.1 2 1 9 133 0.000254065 gene=EVM0004356
EVM0004551.1 MHONG_EVM0004551.1 2 1 4 323 0.0019507 gene=EVM0004551
EVM0004565.1 MHONG_EVM0004565.1 2 1 9 133 0.000254065 gene=EVM0004565
EVM0004697.1 MHONG_EVM0004697.1 2 1 7.3 165 0.000254065 gene=EVM0004697
EVM0004708.1 MHONG_EVM0004708.1 2 1 7.1 210 0.000254065 gene=EVM0004708
EVM0004734.1 MHONG_EVM0004734.1 2 1 6 166 0.000254065 gene=EVM0004734
EVM0004870.1 MHONG_EVM0004870.1 2 1 4.6 368 0.000254065 gene=EVM0004870
EVM0004876.1 MHONG_EVM0004876.1 2 1 0.6 1780 0.00470272 gene=EVM0004876
EVM0005001.1 MHONG_EVM0005001.1 2 1 4.8 230 0.000254065 gene=EVM0005001
EVM0005221.1 MHONG_EVM0005221.1 2 1 1.7 470 0.00246349 gene=EVM0005221
EVM0005315.1 MHONG_EVM0005315.1 2 1 27.2 92 0.000254065 gene=EVM0005315
EVM0005527.1 MHONG_EVM0005527.1 2 1 2.4 422 0.000851426 gene=EVM0005527
EVM0005646.1 MHONG_EVM0005646.1 2 1 1.8 336 0.00785634 gene=EVM0005646
EVM0005816.1 MHONG_EVM0005816.1 2 1 3.4 319 0.00640184 gene=EVM0005816
EVM0005866.1 MHONG_EVM0005866.1 2 1 2.7 524 0.00936622 gene=EVM0005866
EVM0005904.1 MHONG_EVM0005904.1 2 1 3.8 315 0.000254065 gene=EVM0005904
EVM0006229.1 MHONG_EVM0006229.1 2 1 16.5 127 0.000254065 gene=EVM0006229
EVM0006552.1 MHONG_EVM0006552.1 2 1 1.6 634 0.00360515 gene=EVM0006552
EVM0006621.1 MHONG_EVM0006621.1 2 1 9.3 205 0.000254065 gene=EVM0006621
EVM0006639.1 MHONG_EVM0006639.1 2 1 1.6 516 0.00296943 gene=EVM0006639
EVM0006695.1 MHONG_EVM0006695.1 2 1 6.5 184 0.000254065 gene=EVM0006695
EVM0006722.1 MHONG_EVM0006722.1 2 1 3.2 377 0.00129414 gene=EVM0006722
EVM0006823.1 MHONG_EVM0006823.1 2 1 4.6 175 0.000981354 gene=EVM0006823
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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