Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0006935.1 MHONG_EVM0006935.1 2 1 3.4 291 0.0019507 gene=EVM0006935
EVM0006988.1 MHONG_EVM0006988.1 2 1 1.8 568 0.00114789 gene=EVM0006988
EVM0007250.1 MHONG_EVM0007250.1 2 1 3.5 288 0.000254065 gene=EVM0007250
EVM0007427.1 MHONG_EVM0007427.1 2 1 3.2 472 0.000254065 gene=EVM0007427
EVM0007453.1 MHONG_EVM0007453.1 2 1 1.5 957 0.000254065 gene=EVM0007453
EVM0007556.1 MHONG_EVM0007556.1 2 1 8.6 151 0.000254065 gene=EVM0007556
EVM0007660.1 MHONG_EVM0007660.1 2 1 5.5 146 0.000680118 gene=EVM0007660
EVM0007723.1 MHONG_EVM0007723.1 2 1 0.8 2594 0.000254065 gene=EVM0007723
EVM0007813.1 MHONG_EVM0007813.1 2 1 9.9 172 0.000475511 gene=EVM0007813
EVM0007986.1 MHONG_EVM0007986.1 2 1 2.6 311 0.00129414 gene=EVM0007986
EVM0008304.1 MHONG_EVM0008304.1 2 1 14.5 179 0.000254065 gene=EVM0008304
EVM0008466.1 MHONG_EVM0008466.1 2 1 2 459 0.000254065 gene=EVM0008466
EVM0008516.1 MHONG_EVM0008516.1 2 1 1.9 648 0.000254065 gene=EVM0008516
EVM0008597.1 MHONG_EVM0008597.1 2 1 4.3 234 0.00345483 gene=EVM0008597
EVM0008963.1 MHONG_EVM0008963.1 2 1 3.7 380 0.0014556 gene=EVM0008963
EVM0008985.1 MHONG_EVM0008985.1 2 1 1.7 1135 0.000254065 gene=EVM0008985
EVM0009178.1 MHONG_EVM0009178.1 2 1 3.9 412 0.000254065 gene=EVM0009178
EVM0009221.1 MHONG_EVM0009221.1 2 1 7.5 173 0.000254065 gene=EVM0009221
EVM0009237.1 MHONG_EVM0009237.1 2 1 1.4 924 0.000254065 gene=EVM0009237
EVM0009309.1 MHONG_EVM0009309.1 2 1 11.8 102 0.000254065 gene=EVM0009309
EVM0009342.1 MHONG_EVM0009342.1 2 1 9.5 84 0.00129414 gene=EVM0009342
EVM0009424.1 MHONG_EVM0009424.1 2 1 4 227 0.00881335 gene=EVM0009424
EVM0009633.1 MHONG_EVM0009633.1 2 1 14.5 62 0.000981354 gene=EVM0009633
EVM0009741.1 MHONG_EVM0009741.1 2 1 10.7 206 0.000475511 gene=EVM0009741
EVM0009809.1 MHONG_EVM0009809.1 2 1 5 222 0.000254065 gene=EVM0009809
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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