Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0000213.1 MHONG_EVM0000213.1 1 1 1.1 794 0.00360515 gene=EVM0000213
EVM0000305.1 MHONG_EVM0000305.1 1 1 1.1 1149 0.00424088 gene=EVM0000305
EVM0000315.1 MHONG_EVM0000315.1 1 1 6.1 181 0.0014556 gene=EVM0000315
EVM0000334.1 MHONG_EVM0000334.1 1 1 1.7 952 0.000254065 gene=EVM0000334
EVM0000449.1 MHONG_EVM0000449.1 1 1 1.7 835 0.000254065 gene=EVM0000449
EVM0000484.1 MHONG_EVM0000484.1 1 1 4.8 165 0.00741577 gene=EVM0000484
EVM0000585.1 MHONG_EVM0000585.1 1 1 5.3 171 0.000254065 gene=EVM0000585
EVM0000684.1 MHONG_EVM0000684.1 1 1 4.9 370 0.000254065 gene=EVM0000684
EVM0000704.1 MHONG_EVM0000704.1 1 1 1.6 643 0.000981354 gene=EVM0000704
EVM0000826.1 MHONG_EVM0000826.1 1 1 2 543 0.00375876 gene=EVM0000826
EVM0000901.1 MHONG_EVM0000901.1 1 1 4.3 210 0.0014556 gene=EVM0000901
EVM0000916.1 MHONG_EVM0000916.1 1 1 1.4 693 0.000254065 gene=EVM0000916
EVM0001053.1 MHONG_EVM0001053.1 1 1 3 472 0.000254065 gene=EVM0001053
EVM0001104.1 MHONG_EVM0001104.1 1 1 4.3 303 0.00741577 gene=EVM0001104
EVM0001153.1 MHONG_EVM0001153.1 1 1 1.3 903 0.000254065 gene=EVM0001153
EVM0001227.1 MHONG_EVM0001227.1 1 1 3.3 302 0.00129414 gene=EVM0001227
EVM0001242.1 MHONG_EVM0001242.1 1 1 1.6 577 0.000981354 gene=EVM0001242
EVM0001457.1 MHONG_EVM0001457.1 1 1 3.9 230 0.0085362 gene=EVM0001457
EVM0001576.1 MHONG_EVM0001576.1 1 1 7.7 222 0.000254065 gene=EVM0001576
EVM0001836.1 MHONG_EVM0001836.1 1 1 9.4 96 0.00741577 gene=EVM0001836
EVM0001983.1 MHONG_EVM0001983.1 1 1 2.8 436 0.000254065 gene=EVM0001983
EVM0002105.1 MHONG_EVM0002105.1 1 1 1.1 747 0.00994406 gene=EVM0002105
EVM0002173.1 MHONG_EVM0002173.1 1 1 6 182 0.000254065 gene=EVM0002173
EVM0002334.1 MHONG_EVM0002334.1 1 1 1.5 1026 0.000254065 gene=EVM0002334
EVM0002463.1 MHONG_EVM0002463.1 1 1 3 330 0.0014556 gene=EVM0002463
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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