Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0002635.1 MHONG_EVM0002635.1 1 1 7.5 186 0.000254065 gene=EVM0002635
EVM0002674.1 MHONG_EVM0002674.1 1 1 3.8 392 0.000981354 gene=EVM0002674
EVM0002772.1 MHONG_EVM0002772.1 1 1 1.9 633 0.00129414 gene=EVM0002772
EVM0002798.1 MHONG_EVM0002798.1 1 1 5.2 213 0.000981354 gene=EVM0002798
EVM0002905.1 MHONG_EVM0002905.1 1 1 12 75 0.00549085 gene=EVM0002905
EVM0002908.1 MHONG_EVM0002908.1 1 1 4.7 215 0.00129414 gene=EVM0002908
EVM0002978.1 MHONG_EVM0002978.1 1 1 10.2 108 0.00592398 gene=EVM0002978
EVM0003008.1 MHONG_EVM0003008.1 1 1 3.6 362 0.0022952 gene=EVM0003008
EVM0003053.1 MHONG_EVM0003053.1 1 1 6.6 167 0.000254065 gene=EVM0003053
EVM0003326.1 MHONG_EVM0003326.1 1 1 8 113 0.00669606 gene=EVM0003326
EVM0003431.1 MHONG_EVM0003431.1 1 1 2 452 0.0022952 gene=EVM0003431
EVM0003562.1 MHONG_EVM0003562.1 1 1 1.6 837 0.000254065 gene=EVM0003562
EVM0003582.1 MHONG_EVM0003582.1 1 1 2.7 414 0.00114789 gene=EVM0003582
EVM0003614.1 MHONG_EVM0003614.1 1 1 5.4 205 0.0050226 gene=EVM0003614
EVM0003746.1 MHONG_EVM0003746.1 1 1 11.5 157 0.000475511 gene=EVM0003746
EVM0003776.1 MHONG_EVM0003776.1 1 1 5.2 155 0.000981354 gene=EVM0003776
EVM0003807.1 MHONG_EVM0003807.1 1 1 1.1 1017 0.00669606 gene=EVM0003807
EVM0003878.1 MHONG_EVM0003878.1 1 1 17.4 121 0.000475511 gene=EVM0003878
EVM0003951.1 MHONG_EVM0003951.1 1 1 1.5 602 0.000981354 gene=EVM0003951
EVM0003952.1 MHONG_EVM0003952.1 1 1 7.2 195 0.00246349 gene=EVM0003952
EVM0004044.1 MHONG_EVM0004044.1 1 1 3.4 290 0.00114789 gene=EVM0004044
EVM0004115.1 MHONG_EVM0004115.1 1 1 2.6 385 0.00592398 gene=EVM0004115
EVM0004135.1 MHONG_EVM0004135.1 1 1 5.6 213 0.00563287 gene=EVM0004135
EVM0004232.1 MHONG_EVM0004232.1 1 1 1 1310 0.00129414 gene=EVM0004232
EVM0004307.1 MHONG_EVM0004307.1 1 1 4.3 323 0.000981354 gene=EVM0004307
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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