Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0004338.1 MHONG_EVM0004338.1 1 1 1.7 344 0.00563287 gene=EVM0004338
EVM0004404.1 MHONG_EVM0004404.1 1 1 10.6 132 0.000254065 gene=EVM0004404
EVM0004691.1 MHONG_EVM0004691.1 1 1 4.3 325 0.000254065 gene=EVM0004691
EVM0004812.1 MHONG_EVM0004812.1 1 1 3.7 406 0.000254065 gene=EVM0004812
EVM0004879.1 MHONG_EVM0004879.1 1 1 2 605 0.00716029 gene=EVM0004879
EVM0004887.1 MHONG_EVM0004887.1 1 1 3.3 367 0.00129414 gene=EVM0004887
EVM0005075.1 MHONG_EVM0005075.1 1 1 3.9 330 0.000254065 gene=EVM0005075
EVM0005171.1 MHONG_EVM0005171.1 1 1 1.2 1094 0.000680118 gene=EVM0005171
EVM0005195.1 MHONG_EVM0005195.1 1 1 4.1 363 0.000254065 gene=EVM0005195
EVM0005291.1 MHONG_EVM0005291.1 1 1 1.7 721 0.000254065 gene=EVM0005291
EVM0005335.1 MHONG_EVM0005335.1 1 1 0.8 981 0.0019507 gene=EVM0005335
EVM0005507.1 MHONG_EVM0005507.1 1 1 2 546 0.000254065 gene=EVM0005507
EVM0005550.1 MHONG_EVM0005550.1 1 1 2.8 602 0.000254065 gene=EVM0005550
EVM0005559.1 MHONG_EVM0005559.1 1 1 3.3 300 0.00360515 gene=EVM0005559
EVM0005600.1 MHONG_EVM0005600.1 1 1 1.1 1143 0.000254065 gene=EVM0005600
EVM0005720.1 MHONG_EVM0005720.1 1 1 4.7 213 0.000851426 gene=EVM0005720
EVM0005722.1 MHONG_EVM0005722.1 1 1 19.4 108 0.00895522 gene=EVM0005722
EVM0005801.1 MHONG_EVM0005801.1 1 1 4.5 309 0.000851426 gene=EVM0005801
EVM0005822.1 MHONG_EVM0005822.1 1 1 3.7 352 0.000680118 gene=EVM0005822
EVM0005867.1 MHONG_EVM0005867.1 1 1 7.8 154 0.000254065 gene=EVM0005867
EVM0005868.1 MHONG_EVM0005868.1 1 1 3.8 503 0.00669606 gene=EVM0005868
EVM0005909.1 MHONG_EVM0005909.1 1 1 2.9 343 0.00785634 gene=EVM0005909
EVM0005999.1 MHONG_EVM0005999.1 1 1 3.6 303 0.00741577 gene=EVM0005999
EVM0006071.1 MHONG_EVM0006071.1 1 1 4.7 295 0.000254065 gene=EVM0006071
EVM0006085.1 MHONG_EVM0006085.1 1 1 2.2 507 0.000981354 gene=EVM0006085
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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