Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0006803.1 MHONG_EVM0006803.1 28 10 43.8 233 0.000254065 gene=EVM0006803
EVM0002175.1 MHONG_EVM0002175.1 27 10 17.6 598 0.000254065 gene=EVM0002175
EVM0004902.1 MHONG_EVM0004902.1 27 10 32.7 355 0.000254065 gene=EVM0004902
EVM0006576.1 MHONG_EVM0006576.1 27 10 13.7 790 0.000254065 gene=EVM0006576
EVM0002423.1 MHONG_EVM0002423.1 24 10 10.8 1111 0.000254065 gene=EVM0002423
KII68221.1 TKITA_KII68221.1 24 10 43.5 269 0.000254065 Protein-glutamine gamma-glutamyltransferase 5 [Thelohanellus kitauei]
EVM0007480.1 MHONG_EVM0007480.1 22 10 14.2 787 0.000254065 gene=EVM0007480
EVM0013154.1 MHONG_EVM0013154.1 19 10 36 328 0.000254065 gene=EVM0013154
EVM0012961.1 MHONG_EVM0012961.1 15 10 17.3 830 0.000254065 gene=EVM0012961
EVM0012109.1 MHONG_EVM0012109.1 14 10 28.2 436 0.000254065 gene=EVM0012109
EVM0011902.1 MHONG_EVM0011902.1 65 9 44.7 235 0.000254065 gene=EVM0011902
KII67957.1 TKITA_KII67957.1 55 9 61.1 144 0.000254065 Superoxide dismutase [Cu-Zn] [Thelohanellus kitauei]
EVM0005850.1 MHONG_EVM0005850.1 43 9 56.3 183 0.000254065 gene=EVM0005850
KII68477.1 TKITA_KII68477.1 39 9 26.9 212 0.000254065 hypothetical protein RF11_06915 [Thelohanellus kitauei]
EVM0000367.1 MHONG_EVM0000367.1 38 9 33.7 291 0.000254065 gene=EVM0000367
EVM0013188.1 MHONG_EVM0013188.1 38 9 12.2 719 0.000254065 gene=EVM0013188
EVM0013802.1 MHONG_EVM0013802.1 30 9 83.2 173 0.000254065 gene=EVM0013802
EVM0015318.1 MHONG_EVM0015318.1 30 9 63.4 164 0.000254065 gene=EVM0015318
EVM0000024.1 MHONG_EVM0000024.1 28 9 41.4 256 0.000254065 gene=EVM0000024
EVM0003710.1 MHONG_EVM0003710.1 25 9 16.6 469 0.000254065 gene=EVM0003710
KII70192.1 TKITA_KII70192.1 25 9 28.8 511 0.000254065 hypothetical protein RF11_01647 [Thelohanellus kitauei]
EVM0010574.1 MHONG_EVM0010574.1 24 9 21.9 475 0.000254065 gene=EVM0010574
EVM0000123.1 MHONG_EVM0000123.1 23 9 35.2 361 0.000254065 gene=EVM0000123
EVM0013625.1 MHONG_EVM0013625.1 23 9 41.4 203 0.000254065 gene=EVM0013625
EVM0003550.1 MHONG_EVM0003550.1 22 9 20.1 463 0.000254065 gene=EVM0003550
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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