Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0006132.1 MHONG_EVM0006132.1 1 1 1.6 688 0.000254065 gene=EVM0006132
EVM0006225.1 MHONG_EVM0006225.1 1 1 1.8 868 0.000254065 gene=EVM0006225
EVM0006313.1 MHONG_EVM0006313.1 1 1 2.1 615 0.000254065 gene=EVM0006313
EVM0006495.1 MHONG_EVM0006495.1 1 1 13.9 72 0.0019507 gene=EVM0006495
EVM0006750.1 MHONG_EVM0006750.1 1 1 4.6 538 0.00810167 gene=EVM0006750
EVM0006780.1 MHONG_EVM0006780.1 1 1 1.5 715 0.00741577 gene=EVM0006780
EVM0006869.1 MHONG_EVM0006869.1 1 1 5.1 295 0.000254065 gene=EVM0006869
EVM0006920.1 MHONG_EVM0006920.1 1 1 0.6 1871 0.000981354 gene=EVM0006920
EVM0006976.1 MHONG_EVM0006976.1 1 1 1.4 802 0.00114789 gene=EVM0006976
EVM0007061.1 MHONG_EVM0007061.1 1 1 5.3 302 0.00785634 gene=EVM0007061
EVM0007080.1 MHONG_EVM0007080.1 1 1 5.8 240 0.000254065 gene=EVM0007080
EVM0007125.1 MHONG_EVM0007125.1 1 1 18.6 86 0.000254065 gene=EVM0007125
EVM0007182.1 MHONG_EVM0007182.1 1 1 1.2 730 0.000851426 gene=EVM0007182
EVM0007237.1 MHONG_EVM0007237.1 1 1 1.6 943 0.00579566 gene=EVM0007237
EVM0007404.1 MHONG_EVM0007404.1 1 1 5.1 136 0.00994406 gene=EVM0007404
EVM0007457.1 MHONG_EVM0007457.1 1 1 9.6 177 0.00825397 gene=EVM0007457
EVM0007594.1 MHONG_EVM0007594.1 1 1 11.4 201 0.000254065 gene=EVM0007594
EVM0007633.1 MHONG_EVM0007633.1 1 1 3.1 422 0.000254065 gene=EVM0007633
EVM0007640.1 MHONG_EVM0007640.1 1 1 9.2 163 0.000254065 gene=EVM0007640
EVM0007648.1 MHONG_EVM0007648.1 1 1 3.7 459 0.000254065 gene=EVM0007648
EVM0007673.1 MHONG_EVM0007673.1 1 1 0.5 2006 0.000981354 gene=EVM0007673
EVM0007696.1 MHONG_EVM0007696.1 1 1 0.4 2150 0.00825397 gene=EVM0007696
EVM0007811.1 MHONG_EVM0007811.1 1 1 1.2 969 0.00114789 gene=EVM0007811
EVM0007869.1 MHONG_EVM0007869.1 1 1 2.3 470 0.000254065 gene=EVM0007869
EVM0007892.1 MHONG_EVM0007892.1 1 1 1.9 584 0.000254065 gene=EVM0007892
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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