Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0013372.1 MHONG_EVM0013372.1 1 1 5.1 336 0.000254065 gene=EVM0013372
EVM0013405.1 MHONG_EVM0013405.1 1 1 3.8 313 0.0014556 gene=EVM0013405
EVM0013407.1 MHONG_EVM0013407.1 1 1 2.6 379 0.000254065 gene=EVM0013407
EVM0013427.1 MHONG_EVM0013427.1 1 1 12.5 104 0.000254065 gene=EVM0013427
EVM0013455.1 MHONG_EVM0013455.1 1 1 4.2 331 0.0014556 gene=EVM0013455
EVM0013578.1 MHONG_EVM0013578.1 1 1 3 337 0.000254065 gene=EVM0013578
EVM0013640.1 MHONG_EVM0013640.1 1 1 2.4 592 0.000254065 gene=EVM0013640
EVM0013651.1 MHONG_EVM0013651.1 1 1 4.8 311 0.000254065 gene=EVM0013651
EVM0013681.1 MHONG_EVM0013681.1 1 1 2.8 327 0.00810167 gene=EVM0013681
EVM0013858.1 MHONG_EVM0013858.1 1 1 1.4 627 0.000981354 gene=EVM0013858
EVM0013867.1 MHONG_EVM0013867.1 1 1 0.5 1584 0.00785634 gene=EVM0013867
EVM0013891.1 MHONG_EVM0013891.1 1 1 3.8 416 0.000254065 gene=EVM0013891
EVM0013963.1 MHONG_EVM0013963.1 1 1 7 185 0.000254065 gene=EVM0013963
EVM0014007.1 MHONG_EVM0014007.1 1 1 10.4 135 0.000254065 gene=EVM0014007
EVM0014067.1 MHONG_EVM0014067.1 1 1 5.4 314 0.000851426 gene=EVM0014067
EVM0014100.1 MHONG_EVM0014100.1 1 1 6.4 203 0.00741577 gene=EVM0014100
EVM0014231.1 MHONG_EVM0014231.1 1 1 2.3 615 0.000254065 gene=EVM0014231
EVM0014238.1 MHONG_EVM0014238.1 1 1 4.7 234 0.000981354 gene=EVM0014238
EVM0014247.1 MHONG_EVM0014247.1 1 1 1.8 605 0.000254065 gene=EVM0014247
EVM0014380.1 MHONG_EVM0014380.1 1 1 2.3 486 0.000254065 gene=EVM0014380
EVM0014387.1 MHONG_EVM0014387.1 1 1 1.7 355 0.00640184 gene=EVM0014387
EVM0014397.1 MHONG_EVM0014397.1 1 1 8.2 159 0.000254065 gene=EVM0014397
EVM0014421.1 MHONG_EVM0014421.1 1 1 17.3 98 0.00454469 gene=EVM0014421
EVM0014550.1 MHONG_EVM0014550.1 1 1 7.2 222 0.000254065 gene=EVM0014550
EVM0014759.1 MHONG_EVM0014759.1 1 1 2.6 313 0.000254065 gene=EVM0014759
Total protein records: 1669  (+29 contaminants hidden)
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