Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD030136

SpeciesMyxobolus honghuensis; Thelohanellus kitauei; Myxobolus wulii
TissueNematocysts
PRIDE accessionPXD030136
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sda/jackie/cnidaria/2.anno/Myxobolus_honghuensis.pep; /mnt/sda/jackie/cnidaria/2.anno/Thelohanellus_kitauei.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins1669
Peptides (q≤0.01)6436
PSMs (q≤0.01)20078
reprocessed against the CnidoSite reference proteome
29 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
EVM0008159.1 MHONG_EVM0008159.1 24 8 44.1 177 0.000254065 gene=EVM0008159
EVM0013325.1 MHONG_EVM0013325.1 24 8 36.5 241 0.000254065 gene=EVM0013325
EVM0001431.1 MHONG_EVM0001431.1 23 8 11.5 888 0.000254065 gene=EVM0001431
EVM0004881.1 MHONG_EVM0004881.1 23 8 28 239 0.000254065 gene=EVM0004881
EVM0010030.1 MHONG_EVM0010030.1 23 8 29.1 340 0.000254065 gene=EVM0010030
EVM0012765.1 MHONG_EVM0012765.1 23 8 40.2 214 0.000254065 gene=EVM0012765
EVM0001582.1 MHONG_EVM0001582.1 22 8 17.2 553 0.000254065 gene=EVM0001582
EVM0003607.1 MHONG_EVM0003607.1 22 8 32.4 238 0.000254065 gene=EVM0003607
EVM0010911.1 MHONG_EVM0010911.1 22 8 17.7 479 0.000254065 gene=EVM0010911
KII74399.1 TKITA_KII74399.1 22 8 25.4 358 0.000254065 Low-density lipoprotein receptor-related protein 2 [Thelohanellus kitauei]
EVM0002824.1 MHONG_EVM0002824.1 21 8 7.3 1456 0.000254065 gene=EVM0002824
EVM0015377.1 MHONG_EVM0015377.1 21 8 28 304 0.000254065 gene=EVM0015377
KII61911.1 TKITA_KII61911.1 21 8 18 571 0.000254065 Alpha-1-antitrypsin [Thelohanellus kitauei]
EVM0002653.1 MHONG_EVM0002653.1 19 8 5.8 1687 0.000254065 gene=EVM0002653
EVM0005989.1 MHONG_EVM0005989.1 19 8 38.2 246 0.000254065 gene=EVM0005989
KII65977.1 TKITA_KII65977.1 19 8 33.6 235 0.000254065 hypothetical protein RF11_15789 [Thelohanellus kitauei]
EVM0001328.1 MHONG_EVM0001328.1 17 8 58.5 142 0.000254065 gene=EVM0001328
EVM0013036.1 MHONG_EVM0013036.1 17 8 9.5 983 0.000254065 gene=EVM0013036
EVM0013581.1 MHONG_EVM0013581.1 17 8 15.9 578 0.000254065 gene=EVM0013581
KII64280.1 TKITA_KII64280.1 16 8 26.4 231 0.000254065 Serpin B13 [Thelohanellus kitauei]
KII68347.1 TKITA_KII68347.1 15 8 31.2 304 0.000254065 hypothetical protein RF11_06791 [Thelohanellus kitauei]
EVM0002494.1 MHONG_EVM0002494.1 14 8 12.2 882 0.000254065 gene=EVM0002494
EVM0010161.1 MHONG_EVM0010161.1 14 8 21 462 0.000254065 gene=EVM0010161
EVM0005383.1 MHONG_EVM0005383.1 13 8 6.2 1546 0.000254065 gene=EVM0005383
KII73406.1 TKITA_KII73406.1 67 7 29.6 206 0.000254065 Zinc homeostasis factor 1 [Thelohanellus kitauei]
Total protein records: 1669  (+29 contaminants hidden)
Show: proteins per page
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