Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD033068

SpeciesNematostella vectensis
TissueEmbryos
PRIDE accessionPXD033068
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3673
Peptides (q≤0.01)20212
PSMs (q≤0.01)93156
reprocessed against the CnidoSite reference proteome
17 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
XP_048580993.1 NVECT_XP_048580993.1 1 1 0.4 4708 0.00877149 arginine-glutamic acid dipeptide repeats protein [Nematostella vectensis]
XP_048581103.1 NVECT_XP_048581103.1 1 1 1.6 1162 0.0000678288 uncharacterized protein K02A2.6-like isoform X1 [Nematostella vectensis]
XP_048581307.1 NVECT_XP_048581307.1 1 1 0.1 8067 0.00598649 uncharacterized protein LOC5512067 isoform X2 [Nematostella vectensis]
XP_048581628.1 NVECT_XP_048581628.1 1 1 2.8 604 0.0000678288 serine-aspartate repeat-containing protein I-like [Nematostella vectensis]
XP_048581714.1 NVECT_XP_048581714.1 1 1 0.5 4693 0.0000678288 uncharacterized protein LOC5511228 isoform X2 [Nematostella vectensis]
XP_048581759.1 NVECT_XP_048581759.1 1 1 0.3 2683 0.00858112 ectopic P granules protein 5 homolog isoform X2 [Nematostella vectensis]
XP_048582006.1 NVECT_XP_048582006.1 1 1 1 1983 0.0000678288 otoferlin isoform X2 [Nematostella vectensis]
XP_048582030.1 NVECT_XP_048582030.1 1 1 1 1627 0.0000678288 uncharacterized protein LOC125561756 [Nematostella vectensis]
XP_048582119.1 NVECT_XP_048582119.1 1 1 8.3 192 0.00221946 neuropeptide Y receptor type 1 isoform X2 [Nematostella vectensis]
XP_048582237.1 NVECT_XP_048582237.1 1 1 2.4 421 0.0053432 uncharacterized protein LOC116614758 isoform X2 [Nematostella vectensis]
XP_048582319.1 NVECT_XP_048582319.1 1 1 3.7 484 0.00186782 ADP-ribosylation factor GTPase-activating protein 1 isoform X2 [Nematostella vectensis]
XP_048582427.1 NVECT_XP_048582427.1 1 1 0.9 796 0.00322615 uncharacterized protein LOC5506965 isoform X2 [Nematostella vectensis]
XP_048582484.1 NVECT_XP_048582484.1 1 1 0.8 1281 0.0000678288 intraflagellar transport protein 52 homolog isoform X2 [Nematostella vectensis]
XP_048582654.1 NVECT_XP_048582654.1 1 1 1 1906 0.0000678288 uncharacterized protein LOC116601185 isoform X2 [Nematostella vectensis]
XP_048582683.1 NVECT_XP_048582683.1 1 1 0.8 922 0.00105245 rab GTPase-binding effector protein 1 isoform X2 [Nematostella vectensis]
XP_048582748.1 NVECT_XP_048582748.1 1 1 2.8 509 0.0000678288 fibropellin-1 isoform X1 [Nematostella vectensis]
XP_048582828.1 NVECT_XP_048582828.1 1 1 1.1 609 0.00914968 LOW QUALITY PROTEIN: uncharacterized protein K02A2.6-like [Nematostella vectensis]
XP_048583166.1 NVECT_XP_048583166.1 1 1 2.7 520 0.00342719 serine racemase [Nematostella vectensis]
XP_048583369.1 NVECT_XP_048583369.1 1 1 0.4 1913 0.00975344 uncharacterized protein LOC5504594 isoform X2 [Nematostella vectensis]
XP_048583374.1 NVECT_XP_048583374.1 1 1 5.4 483 0.00645129 DAZ-associated protein 1 [Nematostella vectensis]
XP_048583435.1 NVECT_XP_048583435.1 1 1 1.9 1074 0.0000678288 hemicentin-1 isoform X1 [Nematostella vectensis]
XP_048583441.1 NVECT_XP_048583441.1 1 1 0.6 1194 0.00668321 elongation factor-like GTPase 1 isoform X1 [Nematostella vectensis]
XP_048583563.1 NVECT_XP_048583563.1 1 1 1.7 464 0.000261421 deleted in malignant brain tumors 1 protein [Nematostella vectensis]
XP_048583571.1 NVECT_XP_048583571.1 1 1 2.9 443 0.0000678288 CHRNA7-FAM7A fusion protein-like [Nematostella vectensis]
XP_048583686.1 NVECT_XP_048583686.1 1 1 4.8 434 0.00386302 uncharacterized protein LOC116606147 isoform X3 [Nematostella vectensis]
Total protein records: 3673  (+17 contaminants hidden)
Show: proteins per page
TOP