Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.
| Gene | Protein | PSMs | Unique peptides | Coverage (%) | Length | Best q-value | Description |
|---|---|---|---|---|---|---|---|
| XP_032238091.2 | NVECT_XP_032238091.2 | 94 | 23 | 59 | 371 | 0.0000678288 | SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily E member 1-related isoform X3 [Nematostella vectensis] |
| XP_032234199.1 | NVECT_XP_032234199.1 | 89 | 23 | 37 | 587 | 0.0000678288 | 3-ketoacyl-CoA thiolase, mitochondrial [Nematostella vectensis] |
| XP_048581751.1 | NVECT_XP_048581751.1 | 66 | 23 | 25.1 | 1336 | 0.0000678288 | uncharacterized protein LOC5506195 isoform X2 [Nematostella vectensis] |
| XP_001641860.2 | NVECT_XP_001641860.2 | 269 | 22 | 77.9 | 240 | 0.0000678288 | caseinolytic peptidase B protein homolog isoform X1 [Nematostella vectensis] |
| XP_032232148.2 | NVECT_XP_032232148.2 | 204 | 22 | 69.9 | 282 | 0.0000678288 | MAM and LDL-receptor class A domain-containing protein 1 [Nematostella vectensis] |
| XP_001624703.2 | NVECT_XP_001624703.2 | 190 | 22 | 53.3 | 450 | 0.0000678288 | 60S ribosomal protein L11 [Nematostella vectensis] |
| XP_001629500.1 | NVECT_XP_001629500.1 | 161 | 22 | 68.4 | 354 | 0.0000678288 | probable E3 ubiquitin-protein ligase RNF144A-A [Nematostella vectensis] |
| XP_001629349.2 | NVECT_XP_001629349.2 | 153 | 22 | 45 | 655 | 0.0000678288 | glutamine-rich protein 2 [Nematostella vectensis] |
| XP_001622550.2 | NVECT_XP_001622550.2 | 135 | 22 | 66.2 | 358 | 0.0000678288 | alanine aminotransferase 2 isoform X2 [Nematostella vectensis] |
| XP_032230472.1 | NVECT_XP_032230472.1 | 134 | 22 | 42.6 | 645 | 0.0000678288 | nuclear factor NF-kappa-B p100 subunit isoform X2 [Nematostella vectensis] |
| XP_001639623.2 | NVECT_XP_001639623.2 | 132 | 22 | 64.5 | 428 | 0.0000678288 | protein GUCD1 [Nematostella vectensis] |
| XP_032232254.1 | NVECT_XP_032232254.1 | 122 | 22 | 70.4 | 392 | 0.0000678288 | neurogenic locus Notch protein isoform X1 [Nematostella vectensis] |
| XP_032221656.2 | NVECT_XP_032221656.2 | 109 | 22 | 23.4 | 1198 | 0.0000678288 | uncharacterized protein LOC5520759 [Nematostella vectensis] |
| XP_048588525.1 | NVECT_XP_048588525.1 | 97 | 22 | 37.4 | 721 | 0.0000678288 | propionyl-CoA carboxylase alpha chain, mitochondrial isoform X2 [Nematostella vectensis] |
| XP_048588552.1 | NVECT_XP_048588552.1 | 97 | 22 | 25.5 | 1002 | 0.0000678288 | chordin-like protein 1 isoform X1 [Nematostella vectensis] |
| XP_048582906.1 | NVECT_XP_048582906.1 | 95 | 22 | 49.6 | 631 | 0.0000678288 | uncharacterized protein LOC116603391 [Nematostella vectensis] |
| XP_001632822.1 | NVECT_XP_001632822.1 | 92 | 22 | 35.4 | 725 | 0.0000678288 | spermatogenesis-associated protein 4 [Nematostella vectensis] |
| XP_001636422.1 | NVECT_XP_001636422.1 | 86 | 22 | 49.1 | 509 | 0.0000678288 | Na(+)/H(+) antiporter NhaA [Nematostella vectensis] |
| XP_032228742.2 | NVECT_XP_032228742.2 | 79 | 22 | 26.9 | 1055 | 0.0000678288 | alpha-mannosidase 2C1 isoform X2 [Nematostella vectensis] |
| XP_032228766.2 | NVECT_XP_032228766.2 | 79 | 22 | 28.3 | 1063 | 0.0000678288 | histone deacetylase 6 isoform X1 [Nematostella vectensis] |
| XP_048589410.1 | NVECT_XP_048589410.1 | 55 | 22 | 28.3 | 1030 | 0.0000678288 | LON peptidase N-terminal domain and RING finger protein 3 [Nematostella vectensis] |
| XP_032237951.2 | NVECT_XP_032237951.2 | 154 | 21 | 64.1 | 334 | 0.0000678288 | msx2-interacting protein [Nematostella vectensis] |
| XP_048581487.1 | NVECT_XP_048581487.1 | 150 | 21 | 69 | 484 | 0.0000678288 | methanethiol oxidase-like isoform X2 [Nematostella vectensis] |
| XP_048578530.1 | NVECT_XP_048578530.1 | 140 | 21 | 35.3 | 496 | 0.0000678288 | uncharacterized protein LOC116610603 [Nematostella vectensis] |
| XP_032218200.1 | NVECT_XP_032218200.1 | 130 | 21 | 41.2 | 577 | 0.0000678288 | uncharacterized protein LOC116601481 isoform X1 [Nematostella vectensis] |
