Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD041235

SpeciesNematostella vectensis
TissueLarvae/PrimaryPolyps/Juveniles
PRIDE accessionPXD041235
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymenone (endogenous peptides)
Missed cleavages2
Precursor tolerance5 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins385
Peptides (q≤0.01)1393
PSMs (q≤0.01)3147
reprocessed against the CnidoSite reference proteome
1 cRAP contaminant protein  (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
XP_001622587.1 NVECT_XP_001622587.1 1 1 9.5 190 0.00104603 prolyl 4-hydroxylase subunit alpha-1 [Nematostella vectensis]
XP_001622894.3 NVECT_XP_001622894.3 1 1 5.6 198 0.00865177 28S ribosomal protein S2, mitochondrial [Nematostella vectensis]
XP_001623908.2 NVECT_XP_001623908.2 1 1 4.8 355 0.00104603 vesicular inhibitory amino acid transporter [Nematostella vectensis]
XP_001624626.3 NVECT_XP_001624626.3 1 1 25 80 0.00104603 lariat debranching enzyme [Nematostella vectensis]
XP_001625005.2 NVECT_XP_001625005.2 1 1 7.7 182 0.00104603 melatonin receptor type 1B [Nematostella vectensis]
XP_001625463.2 NVECT_XP_001625463.2 1 1 1 1224 0.00865177 Golgi SNAP receptor complex member 2 [Nematostella vectensis]
XP_001625590.2 NVECT_XP_001625590.2 1 1 16.6 145 0.00104603 phospholipid phosphatase 1 [Nematostella vectensis]
XP_001625765.2 NVECT_XP_001625765.2 1 1 3.1 586 0.00104603 rho guanine nucleotide exchange factor 12 isoform X17 [Nematostella vectensis]
XP_001626174.3 NVECT_XP_001626174.3 1 1 1.1 1604 0.00808824 thiosulfate:glutathione sulfurtransferase isoform X3 [Nematostella vectensis]
XP_001626397.2 NVECT_XP_001626397.2 1 1 18 133 0.00104603 tripartite motif-containing protein 45 [Nematostella vectensis]
XP_001626440.1 NVECT_XP_001626440.1 1 1 2.3 559 0.00523169 trans-1,2-dihydrobenzene-1,2-diol dehydrogenase [Nematostella vectensis]
XP_001626741.1 NVECT_XP_001626741.1 1 1 25.2 123 0.00104603 endothelial differentiation-related factor 1 [Nematostella vectensis]
XP_001626833.2 NVECT_XP_001626833.2 1 1 13.4 157 0.00104603 60S ribosomal protein L22 [Nematostella vectensis]
XP_001626838.1 NVECT_XP_001626838.1 1 1 7.2 335 0.00193986 WD repeat domain phosphoinositide-interacting protein 3 [Nematostella vectensis]
XP_001627476.3 NVECT_XP_001627476.3 1 1 9.4 171 0.00104603 cyclic nucleotide-gated channel cone photoreceptor subunit alpha isoform X2 [Nematostella vectensis]
XP_001627742.2 NVECT_XP_001627742.2 1 1 25.9 116 0.00104603 neuromedin-U receptor 2 [Nematostella vectensis]
XP_001627861.2 NVECT_XP_001627861.2 1 1 4.8 314 0.00104603 MFS-type transporter SLC18B1 isoform X2 [Nematostella vectensis]
XP_001628288.1 NVECT_XP_001628288.1 1 1 11.6 112 0.00104603 mesoderm-specific transcript protein [Nematostella vectensis]
XP_001629276.1 NVECT_XP_001629276.1 1 1 3 405 0.00339847 tumor necrosis factor alpha-induced protein 8 isoform X3 [Nematostella vectensis]
XP_001629320.2 NVECT_XP_001629320.2 1 1 17.9 117 0.00104603 BLOC-1-related complex subunit 8 homolog isoform X1 [Nematostella vectensis]
XP_001629343.2 NVECT_XP_001629343.2 1 1 16.7 209 0.00409836 heat shock cognate 71 kDa protein [Nematostella vectensis]
XP_001629390.2 NVECT_XP_001629390.2 1 1 11.3 150 0.00104603 uncharacterized serine-rich protein C215.13 isoform X1 [Nematostella vectensis]
XP_001629565.1 NVECT_XP_001629565.1 1 1 6.5 245 0.00104603 26S proteasome regulatory subunit 6A-B isoform X1 [Nematostella vectensis]
XP_001629756.3 NVECT_XP_001629756.3 1 1 6.3 427 0.00104603 Rieske domain-containing protein isoform X1 [Nematostella vectensis]
XP_001629907.1 NVECT_XP_001629907.1 1 1 4 226 0.00104603 uncharacterized protein LOC5509366 [Nematostella vectensis]
Total protein records: 385  (+1 contaminant hidden)
Show: proteins per page
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