Proteomic Analysis

Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants	include cRAP contaminants in the table

Dataset provenance & search parameters — PXD041235

SpeciesNematostella vectensis

TissueLarvae/PrimaryPolyps/Juveniles

PRIDE accessionPXD041235

Statusreprocessed

Search engineComet 2026.01

Reference proteomeCnidoSite reference proteome

Enzymenone (endogenous peptides)

Missed cleavages2

Precursor tolerance5 ppm

Fragment tolerance0.02 Da

Fixed modificationC+57.021464

Variable modificationM+15.9949

Decoy strategyComet internal reversed (1:1)

FDR (PSM)0.01

Quantificationspectral counting (PSMs)

Proteins385

Peptides (q≤0.01)1393

PSMs (q≤0.01)3147

reprocessed against the CnidoSite reference proteome

1 cRAP contaminant protein (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.

Gene	Protein	PSMs	Unique peptides	Coverage (%)	Length	Best q-value	Description
XP_032229864.1	NVECT_XP_032229864.1	2	2	4.5	552	0.00104603	cannabinoid receptor 2 [Nematostella vectensis]
XP_032230291.1	NVECT_XP_032230291.1	2	2	28.1	114	0.00104603	myotubularin-related protein 6 [Nematostella vectensis]
XP_032237645.2	NVECT_XP_032237645.2	2	2	22.9	153	0.00104603	uncharacterized protein LOC116618245 [Nematostella vectensis]
XP_032238293.2	NVECT_XP_032238293.2	2	2	6.2	546	0.00523169	myoneurin isoform X1 [Nematostella vectensis]
XP_032239432.1	NVECT_XP_032239432.1	2	2	41	144	0.00104603	glutaredoxin-like protein C5orf63 homolog isoform X1 [Nematostella vectensis]
XP_032240112.2	NVECT_XP_032240112.2	2	2	32	97	0.00104603	ETS-related transcription factor Elf-4 isoform X1 [Nematostella vectensis]
XP_048577552.1	NVECT_XP_048577552.1	2	2	4.2	662	0.00104603	probable ATP-dependent RNA helicase DDX10 isoform X1 [Nematostella vectensis]
XP_048579265.1	NVECT_XP_048579265.1	2	2	0.3	22907	0.00104603	titin isoform X2 [Nematostella vectensis]
XP_048580029.1	NVECT_XP_048580029.1	2	2	17	247	0.00339847	plexin domain-containing protein 2 isoform X1 [Nematostella vectensis]
XP_048580084.1	NVECT_XP_048580084.1	2	2	14.6	226	0.00104603	acyl-CoA dehydrogenase family member 11 [Nematostella vectensis]
XP_048581063.1	NVECT_XP_048581063.1	2	2	0.7	2434	0.00104603	uncharacterized protein LOC5514282 isoform X2 [Nematostella vectensis]
XP_048582269.1	NVECT_XP_048582269.1	2	2	4.4	637	0.00193986	polyunsaturated fatty acid 5-lipoxygenase [Nematostella vectensis]
XP_048586219.1	NVECT_XP_048586219.1	2	2	15.7	331	0.00104603	transcription initiation factor IIB-like [Nematostella vectensis]
XP_048589036.1	NVECT_XP_048589036.1	2	2	20.1	149	0.00193986	uncharacterized protein LOC5507938 isoform X1 [Nematostella vectensis]
XP_048590241.1	NVECT_XP_048590241.1	2	2	25.3	261	0.00275482	calcium-activated potassium channel subunit alpha-1 isoform X1 [Nematostella vectensis]
XP_001629218.2	NVECT_XP_001629218.2	10	1	26.7	116	0.00104603	protein disulfide-isomerase A6 homolog [Nematostella vectensis]
XP_048580401.1	NVECT_XP_048580401.1	7	1	28	82	0.00104603	lysosomal alpha-glucosidase [Nematostella vectensis]
XP_048582761.1	NVECT_XP_048582761.1	6	1	6.5	248	0.00104603	inactive pancreatic lipase-related protein 1 isoform X2 [Nematostella vectensis]
XP_001632685.1	NVECT_XP_001632685.1	5	1	1.6	610	0.00104603	uncharacterized protein LOC5512343 [Nematostella vectensis]
XP_048581298.1	NVECT_XP_048581298.1	5	1	4.8	400	0.00104603	uncharacterized protein LOC116603599 [Nematostella vectensis]
XP_001629560.1	NVECT_XP_001629560.1	4	1	19.9	156	0.00104603	nuclear pore glycoprotein p62 isoform X2 [Nematostella vectensis]
XP_032227699.1	NVECT_XP_032227699.1	4	1	0.7	1323	0.00104603	polycystic kidney disease protein 1-like 2 [Nematostella vectensis]
XP_032238768.2	NVECT_XP_032238768.2	4	1	40.1	157	0.00104603	protein arginine N-methyltransferase 5 [Nematostella vectensis]
XP_032238979.2	NVECT_XP_032238979.2	4	1	3.2	472	0.00104603	neuropilin-1 [Nematostella vectensis]
XP_001625870.2	NVECT_XP_001625870.2	3	1	12	217	0.00104603	peptidyl-tRNA hydrolase 2, mitochondrial [Nematostella vectensis]

Total protein records: 385 (+1 contaminant hidden)

Show: proteins per page