Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ26942.1 EDIAP_KXJ26942.1 419 11 40.4 275 0.000121477 hypothetical protein AC249_AIPGENE16458 [Exaiptasia diaphana]
KXJ27224.1 EDIAP_KXJ27224.1 410 11 15.2 692 0.000121477 hypothetical protein AC249_AIPGENE17612 [Exaiptasia diaphana]
KXJ08513.1 EDIAP_KXJ08513.1 401 11 8.8 1233 0.000121477 Fibrillin-1 [Exaiptasia diaphana]
KXJ17072.1 EDIAP_KXJ17072.1 366 11 49.7 195 0.000121477 Transgelin [Exaiptasia diaphana]
KXJ21943.1 EDIAP_KXJ21943.1 347 11 28.9 498 0.000121477 Inactive pancreatic lipase-related protein 1 [Exaiptasia diaphana]
KXJ27230.1 EDIAP_KXJ27230.1 333 11 40 285 0.000121477 Voltage-gated hydrogen channel 1 [Exaiptasia diaphana]
KXJ08372.1 EDIAP_KXJ08372.1 319 11 19.8 739 0.000121477 Ragulator complex protein LAMTOR2 [Exaiptasia diaphana]
KXJ23849.1 EDIAP_KXJ23849.1 313 11 29.4 595 0.000121477 Centrosomal protein of 70 kDa [Exaiptasia diaphana]
KXJ27586.1 EDIAP_KXJ27586.1 303 11 34.7 427 0.000121477 hypothetical protein AC249_AIPGENE7575 [Exaiptasia diaphana]
KXJ18656.1 EDIAP_KXJ18656.1 298 11 47.1 350 0.000121477 hypothetical protein AC249_AIPGENE3815 [Exaiptasia diaphana]
KXJ25698.1 EDIAP_KXJ25698.1 298 11 14.9 937 0.000121477 Dynein heavy chain 6, axonemal [Exaiptasia diaphana]
KXJ20191.1 EDIAP_KXJ20191.1 284 11 20 774 0.000121477 hypothetical protein AC249_AIPGENE15952 [Exaiptasia diaphana]
KXJ14302.1 EDIAP_KXJ14302.1 280 11 37.2 323 0.000121477 Forkhead box protein J3 [Exaiptasia diaphana]
KXJ16363.1 EDIAP_KXJ16363.1 275 11 30 426 0.000121477 Calcium-responsive transcription coactivator [Exaiptasia diaphana]
KXJ25881.1 EDIAP_KXJ25881.1 274 11 27.2 430 0.000121477 Amidophosphoribosyltransferase [Exaiptasia diaphana]
KXJ28733.1 EDIAP_KXJ28733.1 262 11 32.8 515 0.000121477 Histidine N-acetyltransferase [Exaiptasia diaphana]
KXJ25045.1 EDIAP_KXJ25045.1 250 11 35.8 358 0.000121477 hypothetical protein AC249_AIPGENE29223 [Exaiptasia diaphana]
KXJ17271.1 EDIAP_KXJ17271.1 241 11 15.1 973 0.000121477 Chordin-like protein 1 [Exaiptasia diaphana]
KXJ25054.1 EDIAP_KXJ25054.1 241 11 33 397 0.000121477 hypothetical protein AC249_AIPGENE29247 [Exaiptasia diaphana]
KXJ14750.1 EDIAP_KXJ14750.1 235 11 11.5 1135 0.000121477 Mediator of RNA polymerase II transcription subunit 8 [Exaiptasia diaphana]
KXJ15059.1 EDIAP_KXJ15059.1 234 11 21.2 673 0.000121477 Follistatin-related protein 1 [Exaiptasia diaphana]
KXJ12676.1 EDIAP_KXJ12676.1 233 11 42.6 298 0.000121477 Kelch-like protein 17 [Exaiptasia diaphana]
KXJ21227.1 EDIAP_KXJ21227.1 227 11 60.9 179 0.000121477 Protein asteroid-like 1 [Exaiptasia diaphana]
KXJ11857.1 EDIAP_KXJ11857.1 220 11 20.5 628 0.000121477 Sorting nexin-16 [Exaiptasia diaphana]
KXJ11308.1 EDIAP_KXJ11308.1 219 11 29.6 510 0.000121477 ATP-dependent DNA helicase Q4 [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
Show: proteins per page
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