Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ10367.1 EDIAP_KXJ10367.1 216 11 30.5 547 0.000121477 Tetratricopeptide repeat protein 28 [Exaiptasia diaphana]
KXJ15694.1 EDIAP_KXJ15694.1 216 11 23.9 607 0.000121477 Solute carrier organic anion transporter family member 5A1 [Exaiptasia diaphana]
KXJ19134.1 EDIAP_KXJ19134.1 213 11 43.9 303 0.000121477 4-coumarate--CoA ligase [Exaiptasia diaphana]
KXJ14641.1 EDIAP_KXJ14641.1 195 11 35 409 0.000121477 GPI ethanolamine phosphate transferase 1 [Exaiptasia diaphana]
KXJ09742.1 EDIAP_KXJ09742.1 191 11 22.1 621 0.000121477 Adenylyltransferase and sulfurtransferase MOCS3 [Exaiptasia diaphana]
KXJ21153.1 EDIAP_KXJ21153.1 188 11 16.8 954 0.000121477 rhodopsin [Exaiptasia diaphana]
KXJ23144.1 EDIAP_KXJ23144.1 181 11 20.4 695 0.000121477 Transmembrane protein 208 [Exaiptasia diaphana]
KXJ21334.1 EDIAP_KXJ21334.1 180 11 31.1 434 0.000121477 E3 ubiquitin-protein ligase TRAIP [Exaiptasia diaphana]
KXJ27827.1 EDIAP_KXJ27827.1 142 11 33.1 493 0.000121477 Cell cycle checkpoint protein RAD1 [Exaiptasia diaphana]
KXJ25538.1 EDIAP_KXJ25538.1 138 11 14.1 702 0.000121477 Beta-1,3-galactosyltransferase 6 [Exaiptasia diaphana]
KXJ13134.1 EDIAP_KXJ13134.1 135 11 6.9 2120 0.000121477 Voltage-dependent L-type calcium channel subunit alpha-1C [Exaiptasia diaphana]
KXJ08715.1 EDIAP_KXJ08715.1 134 11 12.8 878 0.000121477 Mucin-5B [Exaiptasia diaphana]
KXJ19415.1 EDIAP_KXJ19415.1 120 11 4.9 3595 0.000121477 Unhealthy ribosome biogenesis protein 2-like [Exaiptasia diaphana]
KXJ21160.1 EDIAP_KXJ21160.1 1080 10 7.6 1376 0.000121477 Cyclin-dependent kinase-like 1 [Exaiptasia diaphana]
KXJ25523.1 EDIAP_KXJ25523.1 877 10 39.1 179 0.000121477 Homeobox protein ceh-24 [Exaiptasia diaphana]
KXJ12378.1 EDIAP_KXJ12378.1 698 10 29.9 234 0.000121477 14-3-3-like protein 2 [Exaiptasia diaphana]
KXJ27641.1 EDIAP_KXJ27641.1 618 10 40.3 313 0.000121477 Serine/threonine-protein kinase RIO3 [Exaiptasia diaphana]
KXJ18064.1 EDIAP_KXJ18064.1 593 10 39 315 0.000121477 Protein mab-21-like 3 [Exaiptasia diaphana]
KXJ17205.1 EDIAP_KXJ17205.1 404 10 39.6 333 0.000121477 hypothetical protein AC249_AIPGENE12330, partial [Exaiptasia diaphana]
KXJ16092.1 EDIAP_KXJ16092.1 318 10 16.9 544 0.000121477 Xanthine dehydrogenase/oxidase [Exaiptasia diaphana]
KXJ29408.1 EDIAP_KXJ29408.1 267 10 37.5 373 0.000121477 hypothetical protein AC249_AIPGENE27028 [Exaiptasia diaphana]
KXJ25070.1 EDIAP_KXJ25070.1 256 10 14.4 1005 0.000121477 Tripartite motif-containing protein 2 [Exaiptasia diaphana]
KXJ25779.1 EDIAP_KXJ25779.1 241 10 26.4 560 0.000121477 Transmembrane protein 229B [Exaiptasia diaphana]
KXJ29871.1 EDIAP_KXJ29871.1 233 10 21.1 946 0.000121477 Ral GTPase-activating protein subunit beta [Exaiptasia diaphana]
KXJ12944.1 EDIAP_KXJ12944.1 221 10 19.3 657 0.000121477 hypothetical protein AC249_AIPGENE24107 [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
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