Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ14249.1 EDIAP_KXJ14249.1 2 1 4.7 211 0.00336949 General vesicular transport factor p115 [Exaiptasia diaphana]
KXJ14436.1 EDIAP_KXJ14436.1 2 1 2.8 469 0.00808038 Tripartite motif-containing protein 45 [Exaiptasia diaphana]
KXJ15198.1 EDIAP_KXJ15198.1 2 1 9.5 116 0.00215313 hypothetical protein AC249_AIPGENE11926 [Exaiptasia diaphana]
KXJ15270.1 EDIAP_KXJ15270.1 2 1 5.3 283 0.000617347 Tyrosinase [Exaiptasia diaphana]
KXJ15287.1 EDIAP_KXJ15287.1 2 1 2.7 553 0.000121477 Syndetin [Exaiptasia diaphana]
KXJ15382.1 EDIAP_KXJ15382.1 2 1 0.5 3244 0.00186683 Double zinc ribbon and ankyrin repeat-containing protein 1 [Exaiptasia diaphana]
KXJ15789.1 EDIAP_KXJ15789.1 2 1 1.8 714 0.000323625 hypothetical protein AC249_AIPGENE8645 [Exaiptasia diaphana]
KXJ15831.1 EDIAP_KXJ15831.1 2 1 5.4 277 0.000702459 hypothetical protein AC249_AIPGENE11966 [Exaiptasia diaphana]
KXJ16214.1 EDIAP_KXJ16214.1 2 1 3.2 621 0.000121477 Fibroblast growth factor receptor, partial [Exaiptasia diaphana]
KXJ16470.1 EDIAP_KXJ16470.1 2 1 2 837 0.000121477 hypothetical protein AC249_AIPGENE10263 [Exaiptasia diaphana]
KXJ16912.1 EDIAP_KXJ16912.1 2 1 4.7 256 0.00787346 hypothetical protein AC249_AIPGENE275 [Exaiptasia diaphana]
KXJ16924.1 EDIAP_KXJ16924.1 2 1 0.3 2765 0.00592329 hypothetical protein AC249_AIPGENE253 [Exaiptasia diaphana]
KXJ16984.1 EDIAP_KXJ16984.1 2 1 5.3 493 0.000121477 UPF0661 TPR repeat-containing protein C16D10.01c [Exaiptasia diaphana]
KXJ17019.1 EDIAP_KXJ17019.1 2 1 3.2 437 0.00808038 hypothetical protein AC249_AIPGENE13443 [Exaiptasia diaphana]
KXJ17285.1 EDIAP_KXJ17285.1 2 1 2.2 491 0.00186683 Regulator of nonsense transcripts 3A [Exaiptasia diaphana]
KXJ17517.1 EDIAP_KXJ17517.1 2 1 3.8 707 0.000323625 Ras-related protein Rab-1A [Exaiptasia diaphana]
KXJ17576.1 EDIAP_KXJ17576.1 2 1 1.2 1137 0.00401828 MAP kinase-activating death domain protein [Exaiptasia diaphana]
KXJ17755.1 EDIAP_KXJ17755.1 2 1 1.2 1124 0.00833565 Annexin A7, partial [Exaiptasia diaphana]
KXJ17815.1 EDIAP_KXJ17815.1 2 1 2.1 563 0.000617347 Polyenoic fatty acid isomerase [Exaiptasia diaphana]
KXJ17879.1 EDIAP_KXJ17879.1 2 1 7.3 248 0.000121477 Fork head domain-containing protein FD3 [Exaiptasia diaphana]
KXJ17912.1 EDIAP_KXJ17912.1 2 1 3.9 406 0.000617347 Calmodulin [Exaiptasia diaphana]
KXJ18003.1 EDIAP_KXJ18003.1 2 1 5.8 362 0.00925359 hypothetical protein AC249_AIPGENE27469 [Exaiptasia diaphana]
KXJ18031.1 EDIAP_KXJ18031.1 2 1 2.3 513 0.00186683 Fibropellin-1 [Exaiptasia diaphana]
KXJ18223.1 EDIAP_KXJ18223.1 2 1 1.1 1289 0.000121477 Alpha-ketoglutarate-dependent dioxygenase alkB-like 6 [Exaiptasia diaphana]
KXJ18675.1 EDIAP_KXJ18675.1 2 1 1.6 696 0.00186683 hypothetical protein AC249_AIPGENE25526 [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
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