Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ22103.1 EDIAP_KXJ22103.1 1 1 2.3 559 0.000884173 Prominin-1-A [Exaiptasia diaphana]
KXJ22587.1 EDIAP_KXJ22587.1 1 1 2.9 385 0.00401828 Coagulation factor V [Exaiptasia diaphana]
KXJ22597.1 EDIAP_KXJ22597.1 1 1 11.5 139 0.000121477 DBH-like monooxygenase protein 2-like [Exaiptasia diaphana]
KXJ22940.1 EDIAP_KXJ22940.1 1 1 2.1 821 0.000617347 Protein FAM45A [Exaiptasia diaphana]
KXJ23220.1 EDIAP_KXJ23220.1 1 1 6.5 217 0.00246096 hypothetical protein AC249_AIPGENE3835 [Exaiptasia diaphana]
KXJ23317.1 EDIAP_KXJ23317.1 1 1 1.6 1007 0.000121477 hypothetical protein AC249_AIPGENE6222 [Exaiptasia diaphana]
KXJ23344.1 EDIAP_KXJ23344.1 1 1 0.8 2181 0.000121477 Hairy/enhancer-of-split related with YRPW motif-like protein [Exaiptasia diaphana]
KXJ23394.1 EDIAP_KXJ23394.1 1 1 1.1 897 0.00808038 hypothetical protein AC249_AIPGENE5193 [Exaiptasia diaphana]
KXJ23444.1 EDIAP_KXJ23444.1 1 1 10.9 92 0.00777184 Solute carrier family 22 member 6-B [Exaiptasia diaphana]
KXJ23615.1 EDIAP_KXJ23615.1 1 1 1.4 797 0.00507076 Indoleamine 2,3-dioxygenase 2 [Exaiptasia diaphana]
KXJ23619.1 EDIAP_KXJ23619.1 1 1 1.4 1696 0.000121477 hypothetical protein AC249_AIPGENE20569 [Exaiptasia diaphana]
KXJ23710.1 EDIAP_KXJ23710.1 1 1 2.9 717 0.00215313 hypothetical protein AC249_AIPGENE4456 [Exaiptasia diaphana]
KXJ23797.1 EDIAP_KXJ23797.1 1 1 2.7 524 0.00215313 hypothetical protein AC249_AIPGENE11200 [Exaiptasia diaphana]
KXJ23927.1 EDIAP_KXJ23927.1 1 1 1.1 1226 0.00401828 Krueppel-like factor 5 [Exaiptasia diaphana]
KXJ24049.1 EDIAP_KXJ24049.1 1 1 0.9 1265 0.00129318 EGF-like repeat and discoidin I-like domain-containing protein 3 [Exaiptasia diaphana]
KXJ24052.1 EDIAP_KXJ24052.1 1 1 7.1 212 0.0011354 hypothetical protein AC249_AIPGENE25548 [Exaiptasia diaphana]
KXJ24173.1 EDIAP_KXJ24173.1 1 1 2.1 703 0.00136761 hypothetical protein AC249_AIPGENE16639 [Exaiptasia diaphana]
KXJ24222.1 EDIAP_KXJ24222.1 1 1 1.4 1415 0.0084593 Enoyl-CoA delta isomerase 2, mitochondrial [Exaiptasia diaphana]
KXJ24355.1 EDIAP_KXJ24355.1 1 1 6.6 196 0.00136761 Gamma-aminobutyric acid receptor subunit rho-3 [Exaiptasia diaphana]
KXJ24599.1 EDIAP_KXJ24599.1 1 1 5.9 221 0.000121477 hypothetical protein AC249_AIPGENE24159 [Exaiptasia diaphana]
KXJ24659.1 EDIAP_KXJ24659.1 1 1 3.5 598 0.000121477 hypothetical protein AC249_AIPGENE24741 [Exaiptasia diaphana]
KXJ24713.1 EDIAP_KXJ24713.1 1 1 10.2 255 0.00635733 Cannabinoid receptor 2 [Exaiptasia diaphana]
KXJ24720.1 EDIAP_KXJ24720.1 1 1 4.4 430 0.000121477 Calmodulin-like protein 12 [Exaiptasia diaphana]
KXJ24760.1 EDIAP_KXJ24760.1 1 1 5.5 328 0.00186683 hypothetical protein AC249_AIPGENE21046 [Exaiptasia diaphana]
KXJ25042.1 EDIAP_KXJ25042.1 1 1 3 396 0.00122353 Integrase/recombinase xerD-like [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
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