Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ20176.1 EDIAP_KXJ20176.1 545 25 18.6 988 0.000121477 Fibroleukin [Exaiptasia diaphana]
KXJ11682.1 EDIAP_KXJ11682.1 3870 24 51.3 376 0.000121477 Beta-glucuronidase [Exaiptasia diaphana]
KXJ20029.1 EDIAP_KXJ20029.1 709 23 17 1700 0.000121477 hypothetical protein AC249_AIPGENE17912 [Exaiptasia diaphana]
KXJ14035.1 EDIAP_KXJ14035.1 630 23 33.1 565 0.000121477 SH3 domain-binding glutamic acid-rich-like protein 3 [Exaiptasia diaphana]
KXJ17994.1 EDIAP_KXJ17994.1 502 23 70.6 252 0.000121477 MAM and LDL-receptor class A domain-containing protein 2 [Exaiptasia diaphana]
KXJ16846.1 EDIAP_KXJ16846.1 297 23 9.3 3367 0.000121477 Uncharacterized protein F54H12.2 [Exaiptasia diaphana]
KXJ15406.1 EDIAP_KXJ15406.1 256 23 12.2 2641 0.000121477 Transposon Ty3-G Gag-Pol polyprotein [Exaiptasia diaphana]
KXJ07220.1 EDIAP_KXJ07220.1 962 22 41 434 0.000121477 Metallophosphoesterase 1 [Exaiptasia diaphana]
KXJ20478.1 EDIAP_KXJ20478.1 912 22 32.2 684 0.000121477 Scm-like with four MBT domains protein 1 [Exaiptasia diaphana]
KXJ29158.1 EDIAP_KXJ29158.1 737 22 47.9 484 0.000121477 Beta-1,3-galactosyltransferase 5 [Exaiptasia diaphana]
KXJ21119.1 EDIAP_KXJ21119.1 555 22 18.9 1468 0.000121477 Succinate--hydroxymethylglutarate CoA-transferase [Exaiptasia diaphana]
KXJ18816.1 EDIAP_KXJ18816.1 534 22 33.5 839 0.000121477 Cation channel sperm-associated protein 4 [Exaiptasia diaphana]
KXJ13136.1 EDIAP_KXJ13136.1 499 22 27.5 1047 0.000121477 Voltage-dependent N-type calcium channel subunit alpha-1B [Exaiptasia diaphana]
KXJ26363.1 EDIAP_KXJ26363.1 443 22 24.9 889 0.000121477 hypothetical protein AC249_AIPGENE11606 [Exaiptasia diaphana]
KXJ23744.1 EDIAP_KXJ23744.1 112 22 5.8 5468 0.000121477 putative WD repeat-containing protein all2124 [Exaiptasia diaphana]
KXJ26385.1 EDIAP_KXJ26385.1 1459 21 17.7 1099 0.000121477 Synaptotagmin-C [Exaiptasia diaphana]
KXJ21024.1 EDIAP_KXJ21024.1 853 21 27.6 866 0.000121477 hypothetical protein AC249_AIPGENE4390 [Exaiptasia diaphana]
KXJ21195.1 EDIAP_KXJ21195.1 555 21 28 767 0.000121477 E3 ubiquitin-protein ligase RNF144A [Exaiptasia diaphana]
KXJ29269.1 EDIAP_KXJ29269.1 555 21 33.7 630 0.000121477 hypothetical protein AC249_AIPGENE28984 [Exaiptasia diaphana]
KXJ29728.1 EDIAP_KXJ29728.1 436 21 16.1 1965 0.000121477 hypothetical protein AC249_AIPGENE20665 [Exaiptasia diaphana]
KXJ15115.1 EDIAP_KXJ15115.1 414 21 32.8 778 0.000121477 WD repeat-containing protein 61 [Exaiptasia diaphana]
KXJ23986.1 EDIAP_KXJ23986.1 388 21 23.7 1061 0.000121477 hypothetical protein AC249_AIPGENE180 [Exaiptasia diaphana]
KXJ23128.1 EDIAP_KXJ23128.1 1771 20 10.5 1922 0.000121477 Short-chain collagen C4 [Exaiptasia diaphana]
KXJ20935.1 EDIAP_KXJ20935.1 920 20 34.2 713 0.000121477 Coagulation factor VIII [Exaiptasia diaphana]
KXJ26265.1 EDIAP_KXJ26265.1 812 20 50 320 0.000121477 Protein fem-1-like B [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
Show: proteins per page
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