Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ26464.1 EDIAP_KXJ26464.1 578 16 45.4 348 0.000121477 Carbonic anhydrase 7 [Exaiptasia diaphana]
KXJ26207.1 EDIAP_KXJ26207.1 467 16 29.7 435 0.000121477 TNF receptor-associated factor 3 [Exaiptasia diaphana]
KXJ09693.1 EDIAP_KXJ09693.1 433 16 15.8 1215 0.000121477 Guanylate-binding protein 6 [Exaiptasia diaphana]
KXJ11139.1 EDIAP_KXJ11139.1 383 16 25 773 0.000121477 Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 1 [Exaiptasia diaphana]
KXJ12441.1 EDIAP_KXJ12441.1 333 16 27.3 820 0.000121477 Tetratricopeptide repeat protein 28 [Exaiptasia diaphana]
KXJ27994.1 EDIAP_KXJ27994.1 283 16 4.7 4728 0.000121477 Rho GTPase-activating protein 11B [Exaiptasia diaphana]
KXJ26723.1 EDIAP_KXJ26723.1 228 16 34.1 587 0.000121477 Poly [ADP-ribose] polymerase 12 [Exaiptasia diaphana]
KXJ25170.1 EDIAP_KXJ25170.1 210 16 18.2 1460 0.000121477 Otolin-1 [Exaiptasia diaphana]
KXJ13232.1 EDIAP_KXJ13232.1 161 16 5.3 4286 0.000121477 hypothetical protein AC249_AIPGENE7036 [Exaiptasia diaphana]
KXJ28809.1 EDIAP_KXJ28809.1 1540 15 63.6 242 0.000121477 Centrosomal protein of 120 kDa [Exaiptasia diaphana]
KXJ13435.1 EDIAP_KXJ13435.1 621 15 25.8 593 0.000121477 Toxin CaTX-A [Exaiptasia diaphana]
KXJ23114.1 EDIAP_KXJ23114.1 533 15 27 586 0.000121477 Protein sidekick-2 [Exaiptasia diaphana]
KXJ23133.1 EDIAP_KXJ23133.1 527 15 4 1768 0.000121477 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Exaiptasia diaphana]
KXJ18034.1 EDIAP_KXJ18034.1 400 15 16.6 1226 0.000121477 hypothetical protein AC249_AIPGENE21440 [Exaiptasia diaphana]
KXJ27306.1 EDIAP_KXJ27306.1 398 15 7.6 2551 0.000121477 Regulator of G-protein signaling protein-like [Exaiptasia diaphana]
KXJ27855.1 EDIAP_KXJ27855.1 318 15 25.4 891 0.000121477 Rab GTPase-binding effector protein 1 [Exaiptasia diaphana]
KXJ05637.1 EDIAP_KXJ05637.1 248 15 35.3 447 0.000121477 NACHT, LRR and PYD domains-containing protein 4F [Exaiptasia diaphana]
KXJ13129.1 EDIAP_KXJ13129.1 178 15 6.9 2803 0.000121477 Voltage-dependent calcium channel type A subunit alpha-1 [Exaiptasia diaphana]
KXJ10575.1 EDIAP_KXJ10575.1 166 15 21.1 1050 0.000121477 Toll-like receptor 6 [Exaiptasia diaphana]
KXJ26442.1 EDIAP_KXJ26442.1 1242 14 17.8 667 0.000121477 Cyclic GMP-AMP synthase [Exaiptasia diaphana]
KXJ22965.1 EDIAP_KXJ22965.1 1012 14 18.2 747 0.000121477 Ras-related protein Rab-24 [Exaiptasia diaphana]
KXJ21148.1 EDIAP_KXJ21148.1 942 14 49.6 238 0.000121477 Collagen alpha-1(XII) chain [Exaiptasia diaphana]
KXJ28853.1 EDIAP_KXJ28853.1 692 14 26.2 511 0.000121477 Isocitrate dehydrogenase [NAD] subunit alpha, mitochondrial [Exaiptasia diaphana]
KXJ26715.1 EDIAP_KXJ26715.1 652 14 39.4 363 0.000121477 Glycine dehydrogenase (decarboxylating), mitochondrial [Exaiptasia diaphana]
KXJ18066.1 EDIAP_KXJ18066.1 532 14 36.1 509 0.000121477 hypothetical protein AC249_AIPGENE21454 [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
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