Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ10966.1 EDIAP_KXJ10966.1 392 14 33.1 472 0.000121477 WD repeat and SOCS box-containing protein 1 [Exaiptasia diaphana]
KXJ11284.1 EDIAP_KXJ11284.1 375 14 31.7 530 0.000121477 Coiled-coil domain-containing protein 157 [Exaiptasia diaphana]
KXJ26252.1 EDIAP_KXJ26252.1 368 14 20.1 995 0.000121477 Kinesin-like protein KIF16B [Exaiptasia diaphana]
KXJ24186.1 EDIAP_KXJ24186.1 363 14 28.2 724 0.000121477 Guanine nucleotide-binding protein G(s) subunit alpha [Exaiptasia diaphana]
KXJ04196.1 EDIAP_KXJ04196.1 360 14 27.1 726 0.000121477 Zinc finger protein 706 [Exaiptasia diaphana]
KXJ06041.1 EDIAP_KXJ06041.1 347 14 18.9 1122 0.000121477 hypothetical protein AC249_AIPGENE16699, partial [Exaiptasia diaphana]
KXJ14822.1 EDIAP_KXJ14822.1 302 14 20.9 827 0.000121477 Chondroitin sulfate synthase 2 [Exaiptasia diaphana]
KXJ29411.1 EDIAP_KXJ29411.1 287 14 45.8 325 0.000121477 Protein NLRC5 [Exaiptasia diaphana]
KXJ09697.1 EDIAP_KXJ09697.1 273 14 8.8 2580 0.000121477 Inactive phospholipase C-like protein 1 [Exaiptasia diaphana]
KXJ24029.1 EDIAP_KXJ24029.1 229 14 9.1 2004 0.000121477 Leucine-rich repeat-containing protein 4C [Exaiptasia diaphana]
KXJ29391.1 EDIAP_KXJ29391.1 193 14 9 2203 0.000121477 T-box transcription factor TBX1 [Exaiptasia diaphana]
KXJ14545.1 EDIAP_KXJ14545.1 141 14 14.9 1596 0.000121477 Iron-sulfur cluster assembly 1-like, mitochondrial [Exaiptasia diaphana]
KXJ10478.1 EDIAP_KXJ10478.1 2004 13 41 134 0.000121477 hypothetical protein AC249_AIPGENE9907 [Exaiptasia diaphana]
KXJ15572.1 EDIAP_KXJ15572.1 967 13 60.5 296 0.000121477 ATPase inhibitor, mitochondrial [Exaiptasia diaphana]
KXJ19872.1 EDIAP_KXJ19872.1 685 13 28.5 369 0.000121477 G patch domain and KOW motifs-containing protein [Exaiptasia diaphana]
KXJ17162.1 EDIAP_KXJ17162.1 659 13 36.6 440 0.000121477 hypothetical protein AC249_AIPGENE16220 [Exaiptasia diaphana]
KXJ23249.1 EDIAP_KXJ23249.1 490 13 21.1 969 0.000121477 hypothetical protein AC249_AIPGENE3861 [Exaiptasia diaphana]
KXJ17599.1 EDIAP_KXJ17599.1 488 13 42.4 373 0.000121477 MAP kinase-activating death domain protein [Exaiptasia diaphana]
KXJ21788.1 EDIAP_KXJ21788.1 485 13 7.5 1633 0.000121477 Golgin subfamily A member 2 [Exaiptasia diaphana]
KXJ22788.1 EDIAP_KXJ22788.1 460 13 25.4 634 0.000121477 Krueppel-like factor 5 [Exaiptasia diaphana]
KXJ23845.1 EDIAP_KXJ23845.1 445 13 20.9 263 0.000121477 Spermatogenesis-associated protein 17 [Exaiptasia diaphana]
KXJ11278.1 EDIAP_KXJ11278.1 420 13 40.7 430 0.000121477 Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 [Exaiptasia diaphana]
KXJ26436.1 EDIAP_KXJ26436.1 403 13 23.1 692 0.000121477 Proprotein convertase subtilisin/kexin type 5 [Exaiptasia diaphana]
KXJ17315.1 EDIAP_KXJ17315.1 373 13 40 463 0.000121477 Arylacetamide deacetylase [Exaiptasia diaphana]
KXJ22231.1 EDIAP_KXJ22231.1 369 13 13 1497 0.000121477 Calmodulin [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
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