Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045585

SpeciesExaiptasia diaphana
TissueSymbiont Breviolum minutum
PRIDE accessionPXD045585
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins3451
Peptides (q≤0.01)14806
PSMs (q≤0.01)377023
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ28933.1 EDIAP_KXJ28933.1 370 12 33.2 476 0.000121477 Uridine-cytidine kinase-like 1 [Exaiptasia diaphana]
KXJ13595.1 EDIAP_KXJ13595.1 366 12 30.2 517 0.000121477 Double-stranded RNA-binding protein 1 [Exaiptasia diaphana]
KXJ23368.1 EDIAP_KXJ23368.1 328 12 31.7 451 0.000121477 G-protein coupled receptor Mth2 [Exaiptasia diaphana]
KXJ26033.1 EDIAP_KXJ26033.1 319 12 37.3 236 0.000121477 hypothetical protein AC249_AIPGENE6461 [Exaiptasia diaphana]
KXJ21525.1 EDIAP_KXJ21525.1 315 12 79.6 113 0.000121477 RNA-directed DNA polymerase from mobile element jockey [Exaiptasia diaphana]
KXJ18873.1 EDIAP_KXJ18873.1 308 12 39.2 355 0.000121477 Far upstream element-binding protein 1 [Exaiptasia diaphana]
KXJ16820.1 EDIAP_KXJ16820.1 290 12 19.9 638 0.000121477 hypothetical protein AC249_AIPGENE22815 [Exaiptasia diaphana]
KXJ15999.1 EDIAP_KXJ15999.1 284 12 47.8 341 0.000121477 Eukaryotic translation initiation factor 4E transporter [Exaiptasia diaphana]
KXJ09219.1 EDIAP_KXJ09219.1 268 12 29.4 547 0.000121477 Protein unc-80-like [Exaiptasia diaphana]
KXJ07198.1 EDIAP_KXJ07198.1 247 12 15.3 977 0.000121477 putative RNA-directed DNA polymerase from transposon BS [Exaiptasia diaphana]
KXJ08444.1 EDIAP_KXJ08444.1 246 12 18.5 922 0.000121477 hypothetical protein AC249_AIPGENE21385 [Exaiptasia diaphana]
KXJ08173.1 EDIAP_KXJ08173.1 187 12 28.2 539 0.000121477 hypothetical protein AC249_AIPGENE7820 [Exaiptasia diaphana]
KXJ28445.1 EDIAP_KXJ28445.1 186 12 20 1151 0.000121477 Protein phosphatase 1 regulatory subunit 27 [Exaiptasia diaphana]
KXJ18885.1 EDIAP_KXJ18885.1 178 12 25.3 530 0.000121477 hypothetical protein AC249_AIPGENE20166 [Exaiptasia diaphana]
KXJ11279.1 EDIAP_KXJ11279.1 176 12 14.1 852 0.000121477 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2 [Exaiptasia diaphana]
KXJ05347.1 EDIAP_KXJ05347.1 136 12 18.3 1025 0.000121477 Acetylcholinesterase, partial [Exaiptasia diaphana]
KXJ12680.1 EDIAP_KXJ12680.1 123 12 7.6 2579 0.000121477 hypothetical protein AC249_AIPGENE23211 [Exaiptasia diaphana]
KXJ15325.1 EDIAP_KXJ15325.1 117 12 28 575 0.000121477 Homeobox protein Hox-B4a [Exaiptasia diaphana]
KXJ26352.1 EDIAP_KXJ26352.1 110 12 10 2241 0.000121477 Calcium/calmodulin-dependent protein kinase type II alpha chain [Exaiptasia diaphana]
KXJ28303.1 EDIAP_KXJ28303.1 98 12 20.3 1025 0.000121477 GATA zinc finger domain-containing protein 1 [Exaiptasia diaphana]
KXJ21069.1 EDIAP_KXJ21069.1 560 11 38.2 340 0.000121477 Techylectin-5B [Exaiptasia diaphana]
KXJ28481.1 EDIAP_KXJ28481.1 504 11 36.4 415 0.000121477 Cytoplasmic dynein 2 heavy chain 1 [Exaiptasia diaphana]
KXJ23189.1 EDIAP_KXJ23189.1 468 11 57.2 208 0.000121477 Sodium- and chloride-dependent GABA transporter 2 [Exaiptasia diaphana]
KXJ21032.1 EDIAP_KXJ21032.1 467 11 16.8 691 0.000121477 hypothetical protein AC249_AIPGENE4347 [Exaiptasia diaphana]
KXJ07988.1 EDIAP_KXJ07988.1 457 11 28.6 395 0.000121477 Thioredoxin-like protein 1, partial [Exaiptasia diaphana]
Total protein records: 3451  (+20 contaminants hidden)
Show: proteins per page
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