Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045587

SpeciesExaiptasia diaphana
TissueSymbiont Durusdinium trenchii
PRIDE accessionPXD045587
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins2805
Peptides (q≤0.01)10482
PSMs (q≤0.01)113323
reprocessed against the CnidoSite reference proteome
16 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ10548.1 EDIAP_KXJ10548.1 119 8 45 218 0.000174307 Acylamino-acid-releasing enzyme [Exaiptasia diaphana]
KXJ15940.1 EDIAP_KXJ15940.1 117 8 35 206 0.000174307 Venom prothrombin activator oscutarin-C non-catalytic subunit [Exaiptasia diaphana]
KXJ23118.1 EDIAP_KXJ23118.1 114 8 18.4 702 0.000174307 hypothetical protein AC249_AIPGENE10552 [Exaiptasia diaphana]
KXJ14053.1 EDIAP_KXJ14053.1 109 8 32.9 277 0.000174307 Kinesin light chain [Exaiptasia diaphana]
KXJ21617.1 EDIAP_KXJ21617.1 103 8 36.1 180 0.000174307 hypothetical protein AC249_AIPGENE18000 [Exaiptasia diaphana]
KXJ25881.1 EDIAP_KXJ25881.1 100 8 25.1 430 0.000174307 Amidophosphoribosyltransferase [Exaiptasia diaphana]
KXJ26919.1 EDIAP_KXJ26919.1 98 8 16.7 312 0.000174307 putative G-protein coupled receptor 158 [Exaiptasia diaphana]
KXJ22930.1 EDIAP_KXJ22930.1 97 8 12.2 1069 0.000174307 RING finger protein 37 [Exaiptasia diaphana]
KXJ23782.1 EDIAP_KXJ23782.1 96 8 22.5 365 0.000174307 GTP-binding protein ypt1 [Exaiptasia diaphana]
KXJ27909.1 EDIAP_KXJ27909.1 96 8 28.3 360 0.000174307 putative transferase CAF17-like, mitochondrial [Exaiptasia diaphana]
KXJ23133.1 EDIAP_KXJ23133.1 95 8 3.6 1768 0.000174307 Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Exaiptasia diaphana]
KXJ23982.1 EDIAP_KXJ23982.1 90 8 3.9 1967 0.000174307 hypothetical protein AC249_AIPGENE131 [Exaiptasia diaphana]
KXJ26462.1 EDIAP_KXJ26462.1 90 8 14.3 746 0.000174307 Cytoskeleton-associated protein 2-like [Exaiptasia diaphana]
KXJ14750.1 EDIAP_KXJ14750.1 82 8 8.8 1135 0.000174307 Mediator of RNA polymerase II transcription subunit 8 [Exaiptasia diaphana]
KXJ24814.1 EDIAP_KXJ24814.1 82 8 26.3 419 0.000174307 Steryl-sulfatase [Exaiptasia diaphana]
KXJ18656.1 EDIAP_KXJ18656.1 81 8 35.4 350 0.000174307 hypothetical protein AC249_AIPGENE3815 [Exaiptasia diaphana]
KXJ11830.1 EDIAP_KXJ11830.1 80 8 44.2 242 0.000174307 Transketolase [Exaiptasia diaphana]
KXJ20191.1 EDIAP_KXJ20191.1 76 8 16.4 774 0.000174307 hypothetical protein AC249_AIPGENE15952 [Exaiptasia diaphana]
KXJ10966.1 EDIAP_KXJ10966.1 74 8 17.4 472 0.000174307 WD repeat and SOCS box-containing protein 1 [Exaiptasia diaphana]
KXJ11137.1 EDIAP_KXJ11137.1 74 8 18.6 645 0.000174307 hypothetical protein AC249_AIPGENE9209 [Exaiptasia diaphana]
KXJ09413.1 EDIAP_KXJ09413.1 73 8 23 305 0.000174307 hypothetical protein AC249_AIPGENE28641 [Exaiptasia diaphana]
KXJ13435.1 EDIAP_KXJ13435.1 72 8 15.9 593 0.000174307 Toxin CaTX-A [Exaiptasia diaphana]
KXJ12398.1 EDIAP_KXJ12398.1 71 8 43.8 162 0.000174307 Protein Mpv17 [Exaiptasia diaphana]
KXJ26890.1 EDIAP_KXJ26890.1 71 8 18.9 533 0.000174307 Low-salt glycan biosynthesis protein Agl12 [Exaiptasia diaphana]
KXJ27808.1 EDIAP_KXJ27808.1 71 8 27.3 271 0.000174307 hypothetical protein AC249_AIPGENE9118 [Exaiptasia diaphana]
Total protein records: 2805  (+16 contaminants hidden)
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