Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045587

SpeciesExaiptasia diaphana
TissueSymbiont Durusdinium trenchii
PRIDE accessionPXD045587
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins2805
Peptides (q≤0.01)10482
PSMs (q≤0.01)113323
reprocessed against the CnidoSite reference proteome
16 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ29269.1 EDIAP_KXJ29269.1 71 8 15.2 630 0.000174307 hypothetical protein AC249_AIPGENE28984 [Exaiptasia diaphana]
KXJ12944.1 EDIAP_KXJ12944.1 69 8 15.8 657 0.000174307 hypothetical protein AC249_AIPGENE24107 [Exaiptasia diaphana]
KXJ09338.1 EDIAP_KXJ09338.1 64 8 12.8 982 0.000174307 hypothetical protein AC249_AIPGENE5253 [Exaiptasia diaphana]
KXJ19134.1 EDIAP_KXJ19134.1 61 8 31.4 303 0.000174307 4-coumarate--CoA ligase [Exaiptasia diaphana]
KXJ05283.1 EDIAP_KXJ05283.1 60 8 33.3 378 0.000174307 DNA repair and recombination protein RAD54B, partial [Exaiptasia diaphana]
KXJ19153.1 EDIAP_KXJ19153.1 59 8 25.1 402 0.000174307 Ras-related protein Rab-32B, partial [Exaiptasia diaphana]
KXJ14545.1 EDIAP_KXJ14545.1 58 8 5.4 1596 0.000174307 Iron-sulfur cluster assembly 1-like, mitochondrial [Exaiptasia diaphana]
KXJ28933.1 EDIAP_KXJ28933.1 58 8 23.7 476 0.000174307 Uridine-cytidine kinase-like 1 [Exaiptasia diaphana]
KXJ08692.1 EDIAP_KXJ08692.1 56 8 14.8 838 0.000174307 Cysteine string protein [Exaiptasia diaphana]
KXJ23168.1 EDIAP_KXJ23168.1 56 8 22.7 631 0.000174307 hypothetical protein AC249_AIPGENE10549 [Exaiptasia diaphana]
KXJ29741.1 EDIAP_KXJ29741.1 54 8 31.2 353 0.000174307 Accumulation-associated protein [Exaiptasia diaphana]
KXJ15694.1 EDIAP_KXJ15694.1 53 8 20.1 607 0.000174307 Solute carrier organic anion transporter family member 5A1 [Exaiptasia diaphana]
KXJ14329.1 EDIAP_KXJ14329.1 51 8 11.9 984 0.000174307 Riboflavin kinase [Exaiptasia diaphana]
KXJ15059.1 EDIAP_KXJ15059.1 47 8 14.3 673 0.000174307 Follistatin-related protein 1 [Exaiptasia diaphana]
KXJ21686.1 EDIAP_KXJ21686.1 696 7 13 376 0.000174307 Cytosolic endo-beta-N-acetylglucosaminidase [Exaiptasia diaphana]
KXJ24686.1 EDIAP_KXJ24686.1 183 7 29.8 315 0.000174307 hypothetical protein AC249_AIPGENE20991 [Exaiptasia diaphana]
KXJ12378.1 EDIAP_KXJ12378.1 179 7 26.5 234 0.000174307 14-3-3-like protein 2 [Exaiptasia diaphana]
KXJ28481.1 EDIAP_KXJ28481.1 179 7 19.3 415 0.000174307 Cytoplasmic dynein 2 heavy chain 1 [Exaiptasia diaphana]
KXJ19218.1 EDIAP_KXJ19218.1 147 7 28 243 0.000174307 COBW domain-containing protein 1 [Exaiptasia diaphana]
KXJ14296.1 EDIAP_KXJ14296.1 114 7 23.9 439 0.000174307 hypothetical protein AC249_AIPGENE5965 [Exaiptasia diaphana]
KXJ27230.1 EDIAP_KXJ27230.1 110 7 36.1 285 0.000174307 Voltage-gated hydrogen channel 1 [Exaiptasia diaphana]
KXJ26464.1 EDIAP_KXJ26464.1 108 7 22.4 348 0.000174307 Carbonic anhydrase 7 [Exaiptasia diaphana]
KXJ21032.1 EDIAP_KXJ21032.1 92 7 11 691 0.000174307 hypothetical protein AC249_AIPGENE4347 [Exaiptasia diaphana]
KXJ20902.1 EDIAP_KXJ20902.1 91 7 71.6 134 0.000174307 Choline dehydrogenase, mitochondrial [Exaiptasia diaphana]
KXJ16555.1 EDIAP_KXJ16555.1 90 7 62.7 161 0.000174307 hypothetical protein AC249_AIPGENE27231 [Exaiptasia diaphana]
Total protein records: 2805  (+16 contaminants hidden)
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