Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045587

SpeciesExaiptasia diaphana
TissueSymbiont Durusdinium trenchii
PRIDE accessionPXD045587
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins2805
Peptides (q≤0.01)10482
PSMs (q≤0.01)113323
reprocessed against the CnidoSite reference proteome
16 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ27377.1 EDIAP_KXJ27377.1 233 21 35.6 644 0.000174307 Hydrocephalus-inducing protein-like [Exaiptasia diaphana]
KXJ29425.1 EDIAP_KXJ29425.1 197 21 21.7 941 0.000174307 hypothetical protein AC249_AIPGENE26984 [Exaiptasia diaphana]
KXJ20478.1 EDIAP_KXJ20478.1 326 20 32.2 684 0.000174307 Scm-like with four MBT domains protein 1 [Exaiptasia diaphana]
KXJ22703.1 EDIAP_KXJ22703.1 151 20 10.2 2450 0.000174307 MAM domain-containing protein 2 [Exaiptasia diaphana]
KXJ25966.1 EDIAP_KXJ25966.1 267 19 41.1 574 0.000174307 Synaptotagmin-11 [Exaiptasia diaphana]
KXJ20562.1 EDIAP_KXJ20562.1 257 19 17.8 1250 0.000174307 hypothetical protein AC249_AIPGENE9421 [Exaiptasia diaphana]
KXJ23128.1 EDIAP_KXJ23128.1 393 18 9.2 1922 0.000174307 Short-chain collagen C4 [Exaiptasia diaphana]
KXJ13129.1 EDIAP_KXJ13129.1 297 18 7.2 2803 0.000174307 Voltage-dependent calcium channel type A subunit alpha-1 [Exaiptasia diaphana]
KXJ25073.1 EDIAP_KXJ25073.1 244 18 46.9 392 0.000174307 Trace amine-associated receptor 7d [Exaiptasia diaphana]
KXJ21024.1 EDIAP_KXJ21024.1 226 18 26.2 866 0.000174307 hypothetical protein AC249_AIPGENE4390 [Exaiptasia diaphana]
KXJ20176.1 EDIAP_KXJ20176.1 159 18 16.3 988 0.000174307 Fibroleukin [Exaiptasia diaphana]
KXJ26385.1 EDIAP_KXJ26385.1 473 17 16.7 1099 0.000174307 Synaptotagmin-C [Exaiptasia diaphana]
KXJ19341.1 EDIAP_KXJ19341.1 207 17 32 603 0.000174307 Delta(14)-sterol reductase [Exaiptasia diaphana]
KXJ20423.1 EDIAP_KXJ20423.1 190 17 19.4 1110 0.000174307 B-cell lymphoma 3 protein-like [Exaiptasia diaphana]
KXJ06433.1 EDIAP_KXJ06433.1 175 17 14.5 952 0.000174307 hypothetical protein AC249_AIPGENE17187 [Exaiptasia diaphana]
KXJ21266.1 EDIAP_KXJ21266.1 115 17 18.1 1298 0.000174307 60S ribosome subunit biogenesis protein NIP7-like [Exaiptasia diaphana]
KXJ09697.1 EDIAP_KXJ09697.1 114 17 10.9 2580 0.000174307 Inactive phospholipase C-like protein 1 [Exaiptasia diaphana]
KXJ16139.1 EDIAP_KXJ16139.1 326 16 37.5 554 0.000174307 Cytosolic carboxypeptidase 1 [Exaiptasia diaphana]
KXJ20199.1 EDIAP_KXJ20199.1 226 16 23.8 702 0.000174307 Enhancer of split mdelta protein [Exaiptasia diaphana]
KXJ07220.1 EDIAP_KXJ07220.1 210 16 30.4 434 0.000174307 Metallophosphoesterase 1 [Exaiptasia diaphana]
KXJ13136.1 EDIAP_KXJ13136.1 170 16 23.2 1047 0.000174307 Voltage-dependent N-type calcium channel subunit alpha-1B [Exaiptasia diaphana]
KXJ29853.1 EDIAP_KXJ29853.1 155 16 26.6 726 0.000174307 MAGUK p55 subfamily member 5 [Exaiptasia diaphana]
KXJ19378.1 EDIAP_KXJ19378.1 148 16 37.6 450 0.000174307 Histone H4 [Exaiptasia diaphana]
KXJ25170.1 EDIAP_KXJ25170.1 89 16 15.6 1460 0.000174307 Otolin-1 [Exaiptasia diaphana]
KXJ16846.1 EDIAP_KXJ16846.1 78 16 7.5 3367 0.000174307 Uncharacterized protein F54H12.2 [Exaiptasia diaphana]
Total protein records: 2805  (+16 contaminants hidden)
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