Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD045587

SpeciesExaiptasia diaphana
TissueSymbiont Durusdinium trenchii
PRIDE accessionPXD045587
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin/P
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.5 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins2805
Peptides (q≤0.01)10482
PSMs (q≤0.01)113323
reprocessed against the CnidoSite reference proteome
16 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ18731.1 EDIAP_KXJ18731.1 54 11 13.5 888 0.000174307 Polycystic kidney disease protein 1-like 2 [Exaiptasia diaphana]
KXJ21160.1 EDIAP_KXJ21160.1 249 10 7.6 1376 0.000174307 Cyclin-dependent kinase-like 1 [Exaiptasia diaphana]
KXJ29841.1 EDIAP_KXJ29841.1 202 10 6.7 1803 0.000174307 Alpha-(1,6)-fucosyltransferase [Exaiptasia diaphana]
KXJ08670.1 EDIAP_KXJ08670.1 192 10 36.5 367 0.000174307 hypothetical protein AC249_AIPGENE4960 [Exaiptasia diaphana]
KXJ27641.1 EDIAP_KXJ27641.1 144 10 40.3 313 0.000174307 Serine/threonine-protein kinase RIO3 [Exaiptasia diaphana]
KXJ25979.1 EDIAP_KXJ25979.1 142 10 23.9 490 0.000174307 putative E3 ubiquitin-protein ligase HERC1 [Exaiptasia diaphana]
KXJ15999.1 EDIAP_KXJ15999.1 133 10 42.5 341 0.000174307 Eukaryotic translation initiation factor 4E transporter [Exaiptasia diaphana]
KXJ23114.1 EDIAP_KXJ23114.1 129 10 19.3 586 0.000174307 Protein sidekick-2 [Exaiptasia diaphana]
KXJ26033.1 EDIAP_KXJ26033.1 125 10 36.9 236 0.000174307 hypothetical protein AC249_AIPGENE6461 [Exaiptasia diaphana]
KXJ09437.1 EDIAP_KXJ09437.1 118 10 12.6 1464 0.000174307 hypothetical protein AC249_AIPGENE16744 [Exaiptasia diaphana]
KXJ22788.1 EDIAP_KXJ22788.1 113 10 21.8 634 0.000174307 Krueppel-like factor 5 [Exaiptasia diaphana]
KXJ20935.1 EDIAP_KXJ20935.1 108 10 21.3 713 0.000174307 Coagulation factor VIII [Exaiptasia diaphana]
KXJ26277.1 EDIAP_KXJ26277.1 104 10 19.1 482 0.000174307 Protein eva-1-like C [Exaiptasia diaphana]
KXJ16087.1 EDIAP_KXJ16087.1 103 10 14.2 1351 0.000174307 Non-specific lipid-transfer protein [Exaiptasia diaphana]
KXJ18064.1 EDIAP_KXJ18064.1 93 10 39 315 0.000174307 Protein mab-21-like 3 [Exaiptasia diaphana]
KXJ30180.1 EDIAP_KXJ30180.1 92 10 36 289 0.000174307 Synaptoporin [Exaiptasia diaphana]
KXJ24186.1 EDIAP_KXJ24186.1 91 10 21.7 724 0.000174307 Guanine nucleotide-binding protein G(s) subunit alpha [Exaiptasia diaphana]
KXJ17271.1 EDIAP_KXJ17271.1 87 10 16 973 0.000174307 Chordin-like protein 1 [Exaiptasia diaphana]
KXJ29807.1 EDIAP_KXJ29807.1 81 10 16.2 816 0.000174307 Tyrosyl-DNA phosphodiesterase 2 [Exaiptasia diaphana]
KXJ09219.1 EDIAP_KXJ09219.1 77 10 24.7 547 0.000174307 Protein unc-80-like [Exaiptasia diaphana]
KXJ11279.1 EDIAP_KXJ11279.1 75 10 13.4 852 0.000174307 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2 [Exaiptasia diaphana]
KXJ08242.1 EDIAP_KXJ08242.1 74 10 17.4 794 0.000174307 Neurocalcin-delta [Exaiptasia diaphana]
KXJ25828.1 EDIAP_KXJ25828.1 71 10 17.9 848 0.000174307 hypothetical protein AC249_AIPGENE27655 [Exaiptasia diaphana]
KXJ11284.1 EDIAP_KXJ11284.1 66 10 27.4 530 0.000174307 Coiled-coil domain-containing protein 157 [Exaiptasia diaphana]
KXJ09844.1 EDIAP_KXJ09844.1 62 10 26.7 430 0.000174307 Transmembrane protein 98 [Exaiptasia diaphana]
Total protein records: 2805  (+16 contaminants hidden)
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