Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD051329

SpeciesExaiptasia diaphana
TissueCyst structure
PRIDE accessionPXD051329
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins298
Peptides (q≤0.01)878
PSMs (q≤0.01)14764
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ20364.1 EDIAP_KXJ20364.1 7 1 3.5 256 0.00148368 UPF0686 protein C11orf1-like [Exaiptasia diaphana]
KXJ25164.1 EDIAP_KXJ25164.1 7 1 7.1 126 0.00148368 Leucine-rich repeat-containing protein 63 [Exaiptasia diaphana]
KXJ12531.1 EDIAP_KXJ12531.1 6 1 4.7 236 0.00148368 Pro-Pol polyprotein [Exaiptasia diaphana]
KXJ14241.1 EDIAP_KXJ14241.1 6 1 1.9 575 0.00148368 hypothetical protein AC249_AIPGENE13348 [Exaiptasia diaphana]
KXJ17641.1 EDIAP_KXJ17641.1 6 1 5.7 192 0.00148368 Zinc finger protein 75A [Exaiptasia diaphana]
KXJ18638.1 EDIAP_KXJ18638.1 6 1 2.2 537 0.00148368 hypothetical protein AC249_AIPGENE3772 [Exaiptasia diaphana]
KXJ21224.1 EDIAP_KXJ21224.1 6 1 1.4 1515 0.00148368 BRCA1-associated protein [Exaiptasia diaphana]
KXJ21241.1 EDIAP_KXJ21241.1 6 1 4.9 224 0.00148368 hypothetical protein AC249_AIPGENE1481 [Exaiptasia diaphana]
KXJ21989.1 EDIAP_KXJ21989.1 6 1 8.2 158 0.00148368 CUB and peptidase domain-containing protein 1 [Exaiptasia diaphana]
KXJ23291.1 EDIAP_KXJ23291.1 6 1 1.2 730 0.003663 Histone H2A [Exaiptasia diaphana]
KXJ28298.1 EDIAP_KXJ28298.1 6 1 0.9 1316 0.00800915 Myosin-2 essential light chain [Exaiptasia diaphana]
KXJ29961.1 EDIAP_KXJ29961.1 6 1 5.3 244 0.00148368 Histone H4 [Exaiptasia diaphana]
KXJ12565.1 EDIAP_KXJ12565.1 5 1 2.1 625 0.00289017 hypothetical protein AC249_AIPGENE14582 [Exaiptasia diaphana]
KXJ15715.1 EDIAP_KXJ15715.1 5 1 4.5 243 0.00148368 Protein MAK16-like A [Exaiptasia diaphana]
KXJ16291.1 EDIAP_KXJ16291.1 5 1 1.4 844 0.00148368 hypothetical protein AC249_AIPGENE28273, partial [Exaiptasia diaphana]
KXJ16509.1 EDIAP_KXJ16509.1 5 1 3.1 510 0.00148368 hypothetical protein AC249_AIPGENE8760 [Exaiptasia diaphana]
KXJ17768.1 EDIAP_KXJ17768.1 5 1 1.4 881 0.003663 Glycogen phosphorylase [Exaiptasia diaphana]
KXJ18185.1 EDIAP_KXJ18185.1 5 1 3.7 321 0.003663 hypothetical protein AC249_AIPGENE9367 [Exaiptasia diaphana]
KXJ19452.1 EDIAP_KXJ19452.1 5 1 2 501 0.00696056 Cysteine-rich hydrophobic domain-containing protein 2 [Exaiptasia diaphana]
KXJ23623.1 EDIAP_KXJ23623.1 5 1 3.6 411 0.003663 Ras-related C3 botulinum toxin substrate 1 [Exaiptasia diaphana]
KXJ26137.1 EDIAP_KXJ26137.1 5 1 2.8 429 0.003663 hypothetical protein AC249_AIPGENE15784 [Exaiptasia diaphana]
KXJ09890.1 EDIAP_KXJ09890.1 4 1 3.2 380 0.00148368 PI-PLC X domain-containing protein 2 [Exaiptasia diaphana]
KXJ11279.1 EDIAP_KXJ11279.1 4 1 2.1 852 0.00148368 Coiled-coil-helix-coiled-coil-helix domain-containing protein 2 [Exaiptasia diaphana]
KXJ12737.1 EDIAP_KXJ12737.1 4 1 4.2 216 0.003663 Dual specificity protein phosphatase 16 [Exaiptasia diaphana]
KXJ16040.1 EDIAP_KXJ16040.1 4 1 1.6 765 0.00911162 Beta-1,4-N-acetylgalactosaminyltransferase 3 [Exaiptasia diaphana]
Total protein records: 298  (+20 contaminants hidden)
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