Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD051329

SpeciesExaiptasia diaphana
TissueCyst structure
PRIDE accessionPXD051329
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins298
Peptides (q≤0.01)878
PSMs (q≤0.01)14764
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ16103.1 EDIAP_KXJ16103.1 4 1 8.9 146 0.00148368 Neuronal acetylcholine receptor subunit alpha-2 [Exaiptasia diaphana]
KXJ20336.1 EDIAP_KXJ20336.1 4 1 0.9 1101 0.003663 Uncharacterized protein C05D11.1 [Exaiptasia diaphana]
KXJ21091.1 EDIAP_KXJ21091.1 4 1 1.5 881 0.003663 hypothetical protein AC249_AIPGENE27769 [Exaiptasia diaphana]
KXJ21132.1 EDIAP_KXJ21132.1 4 1 0.8 1415 0.00696056 Protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1 [Exaiptasia diaphana]
KXJ22816.1 EDIAP_KXJ22816.1 4 1 2.2 358 0.00696056 Zinc metalloproteinase nas-13 [Exaiptasia diaphana]
KXJ25758.1 EDIAP_KXJ25758.1 4 1 1.9 540 0.00696056 hypothetical protein AC249_AIPGENE2165 [Exaiptasia diaphana]
KXJ25977.1 EDIAP_KXJ25977.1 4 1 5.3 245 0.003663 HAUS augmin-like complex subunit 6 [Exaiptasia diaphana]
KXJ27230.1 EDIAP_KXJ27230.1 4 1 4.9 285 0.003663 Voltage-gated hydrogen channel 1 [Exaiptasia diaphana]
KXJ27750.1 EDIAP_KXJ27750.1 4 1 1.2 869 0.003663 Acyl-CoA dehydrogenase family member 10 [Exaiptasia diaphana]
KXJ28265.1 EDIAP_KXJ28265.1 4 1 3.1 294 0.003663 Neuropeptide Y receptor type 1 [Exaiptasia diaphana]
KXJ06426.1 EDIAP_KXJ06426.1 3 1 5 262 0.003663 hypothetical protein AC249_AIPGENE16109 [Exaiptasia diaphana]
KXJ07480.1 EDIAP_KXJ07480.1 3 1 3.8 320 0.00696056 60S ribosomal protein L21 [Exaiptasia diaphana]
KXJ07550.1 EDIAP_KXJ07550.1 3 1 7.4 299 0.00148368 putative serine/threonine-protein kinase pats1 [Exaiptasia diaphana]
KXJ07557.1 EDIAP_KXJ07557.1 3 1 6.4 265 0.00148368 Steroid 17-alpha-hydroxylase/17,20 lyase [Exaiptasia diaphana]
KXJ09980.1 EDIAP_KXJ09980.1 3 1 2.7 414 0.003663 hypothetical protein AC249_AIPGENE24377 [Exaiptasia diaphana]
KXJ15996.1 EDIAP_KXJ15996.1 3 1 12.4 89 0.003663 1-aminocyclopropane-1-carboxylate oxidase [Exaiptasia diaphana]
KXJ17280.1 EDIAP_KXJ17280.1 3 1 3.7 406 0.00148368 Neurotactin [Exaiptasia diaphana]
KXJ17653.1 EDIAP_KXJ17653.1 3 1 2 501 0.003663 Kelch-like protein 20 [Exaiptasia diaphana]
KXJ20911.1 EDIAP_KXJ20911.1 3 1 4.1 267 0.00696056 hypothetical protein AC249_AIPGENE28895 [Exaiptasia diaphana]
KXJ21851.1 EDIAP_KXJ21851.1 3 1 3.8 366 0.003663 Dimethylaniline monooxygenase [N-oxide-forming] 2 [Exaiptasia diaphana]
KXJ25106.1 EDIAP_KXJ25106.1 3 1 1.2 1030 0.00911162 hypothetical protein AC249_AIPGENE21263 [Exaiptasia diaphana]
KXJ26439.1 EDIAP_KXJ26439.1 3 1 1.8 494 0.003663 Acyloxyacyl hydrolase [Exaiptasia diaphana]
KXJ28237.1 EDIAP_KXJ28237.1 3 1 3.2 315 0.003663 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 [Exaiptasia diaphana]
KXJ28998.1 EDIAP_KXJ28998.1 3 1 3.2 380 0.00148368 Uncharacterized protein L662 [Exaiptasia diaphana]
KXJ29353.1 EDIAP_KXJ29353.1 3 1 2.3 484 0.00148368 hypothetical protein AC249_AIPGENE29096 [Exaiptasia diaphana]
Total protein records: 298  (+20 contaminants hidden)
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