Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD051329

SpeciesExaiptasia diaphana
TissueCyst structure
PRIDE accessionPXD051329
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins298
Peptides (q≤0.01)878
PSMs (q≤0.01)14764
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ26552.1 EDIAP_KXJ26552.1 14 2 9.8 214 0.00148368 MYCBP-associated protein [Exaiptasia diaphana]
KXJ18034.1 EDIAP_KXJ18034.1 13 2 2.4 1226 0.00148368 hypothetical protein AC249_AIPGENE21440 [Exaiptasia diaphana]
KXJ20005.1 EDIAP_KXJ20005.1 13 2 7.2 586 0.00148368 hypothetical protein AC249_AIPGENE15303 [Exaiptasia diaphana]
KXJ10810.1 EDIAP_KXJ10810.1 12 2 4.1 675 0.003663 hypothetical protein AC249_AIPGENE28714 [Exaiptasia diaphana]
KXJ14452.1 EDIAP_KXJ14452.1 12 2 7.7 246 0.00148368 Spermatogenesis-associated protein 7-like [Exaiptasia diaphana]
KXJ14924.1 EDIAP_KXJ14924.1 12 2 2.9 480 0.00148368 Betaine--homocysteine S-methyltransferase 1 [Exaiptasia diaphana]
KXJ18064.1 EDIAP_KXJ18064.1 12 2 7.9 315 0.00148368 Protein mab-21-like 3 [Exaiptasia diaphana]
KXJ24949.1 EDIAP_KXJ24949.1 12 2 9.3 118 0.00148368 Transcription factor Ovo-like 2 [Exaiptasia diaphana]
KXJ26622.1 EDIAP_KXJ26622.1 12 2 6 568 0.00148368 Low-salt glycan biosynthesis protein Agl12 [Exaiptasia diaphana]
KXJ15115.1 EDIAP_KXJ15115.1 11 2 3.1 778 0.00289017 WD repeat-containing protein 61 [Exaiptasia diaphana]
KXJ23780.1 EDIAP_KXJ23780.1 11 2 24.4 78 0.00148368 NHL repeat-containing protein 2 [Exaiptasia diaphana]
KXJ26578.1 EDIAP_KXJ26578.1 11 2 1 1966 0.00148368 hypothetical protein AC249_AIPGENE8218 [Exaiptasia diaphana]
KXJ19812.1 EDIAP_KXJ19812.1 10 2 2.4 913 0.00148368 Arginine-glutamic acid dipeptide repeats protein [Exaiptasia diaphana]
KXJ14301.1 EDIAP_KXJ14301.1 9 2 4.9 288 0.003663 Zinc metalloproteinase nas-15 [Exaiptasia diaphana]
KXJ28182.1 EDIAP_KXJ28182.1 9 2 7 689 0.00148368 Disks large-associated protein 1 [Exaiptasia diaphana]
KXJ22971.1 EDIAP_KXJ22971.1 8 2 4.3 559 0.00148368 Pancreatic secretory granule membrane major glycoprotein GP2 [Exaiptasia diaphana]
KXJ30222.1 EDIAP_KXJ30222.1 8 2 0.3 3185 0.003663 Mannose-1-phosphate guanyltransferase beta-B [Exaiptasia diaphana]
KXJ17495.1 EDIAP_KXJ17495.1 7 2 4.9 246 0.003663 Golgi resident protein GCP60 [Exaiptasia diaphana]
KXJ26382.1 EDIAP_KXJ26382.1 7 2 4.2 524 0.00148368 hypothetical protein AC249_AIPGENE11632 [Exaiptasia diaphana]
KXJ14669.1 EDIAP_KXJ14669.1 6 2 4.3 276 0.003663 hypothetical protein AC249_AIPGENE20497, partial [Exaiptasia diaphana]
KXJ15059.1 EDIAP_KXJ15059.1 6 2 4.2 673 0.00148368 Follistatin-related protein 1 [Exaiptasia diaphana]
KXJ17284.1 EDIAP_KXJ17284.1 5 2 3.8 1019 0.003663 DnaJ-like subfamily C member 3 [Exaiptasia diaphana]
KXJ27290.1 EDIAP_KXJ27290.1 5 2 9 255 0.00148368 Parapinopsin [Exaiptasia diaphana]
KXJ25236.1 EDIAP_KXJ25236.1 4 2 1.2 1915 0.00148368 Interferon-inducible GTPase 5 [Exaiptasia diaphana]
KXJ17499.1 EDIAP_KXJ17499.1 3 2 3.2 1091 0.00148368 Lysostaphin [Exaiptasia diaphana]
Total protein records: 298  (+20 contaminants hidden)
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