Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD051329

SpeciesExaiptasia diaphana
TissueCyst structure
PRIDE accessionPXD051329
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins298
Peptides (q≤0.01)878
PSMs (q≤0.01)14764
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ21686.1 EDIAP_KXJ21686.1 306 1 4.3 376 0.00148368 Cytosolic endo-beta-N-acetylglucosaminidase [Exaiptasia diaphana]
KXJ15098.1 EDIAP_KXJ15098.1 209 1 5.5 328 0.00148368 Methionyl-tRNA formyltransferase, mitochondrial [Exaiptasia diaphana]
KXJ22151.1 EDIAP_KXJ22151.1 71 1 6.1 247 0.00148368 hypothetical protein AC249_AIPGENE4193 [Exaiptasia diaphana]
KXJ17789.1 EDIAP_KXJ17789.1 59 1 3.6 411 0.00148368 Tubulin beta-1 chain [Exaiptasia diaphana]
KXJ17790.1 EDIAP_KXJ17790.1 37 1 2 450 0.00148368 Non-homologous end-joining factor 1 [Exaiptasia diaphana]
KXJ17229.1 EDIAP_KXJ17229.1 35 1 4.2 337 0.00148368 hypothetical protein AC249_AIPGENE12307 [Exaiptasia diaphana]
KXJ15743.1 EDIAP_KXJ15743.1 34 1 4.9 224 0.00148368 Polycomb group RING finger protein 5-A [Exaiptasia diaphana]
KXJ16886.1 EDIAP_KXJ16886.1 32 1 15.5 84 0.00148368 Titin [Exaiptasia diaphana]
KXJ07023.1 EDIAP_KXJ07023.1 31 1 8.3 132 0.00148368 Leucine-rich repeat-containing protein 74A [Exaiptasia diaphana]
KXJ16778.1 EDIAP_KXJ16778.1 31 1 7.1 210 0.00148368 Receptor-binding cancer antigen expressed on SiSo cells [Exaiptasia diaphana]
KXJ18474.1 EDIAP_KXJ18474.1 30 1 3.1 354 0.00148368 Protein dachsous [Exaiptasia diaphana]
KXJ26485.1 EDIAP_KXJ26485.1 30 1 1.9 736 0.00148368 Sodium-coupled monocarboxylate transporter 1 [Exaiptasia diaphana]
KXJ20935.1 EDIAP_KXJ20935.1 29 1 1.8 713 0.00148368 Coagulation factor VIII [Exaiptasia diaphana]
KXJ23114.1 EDIAP_KXJ23114.1 29 1 2 586 0.00148368 Protein sidekick-2 [Exaiptasia diaphana]
KXJ07611.1 EDIAP_KXJ07611.1 28 1 6 199 0.00148368 hypothetical protein AC249_AIPGENE22767 [Exaiptasia diaphana]
KXJ09413.1 EDIAP_KXJ09413.1 28 1 3.9 305 0.00148368 hypothetical protein AC249_AIPGENE28641 [Exaiptasia diaphana]
KXJ15729.1 EDIAP_KXJ15729.1 26 1 1.8 660 0.00148368 Wolframin [Exaiptasia diaphana]
KXJ04220.1 EDIAP_KXJ04220.1 24 1 6.4 202 0.00148368 RAD52 motif-containing protein 1 [Exaiptasia diaphana]
KXJ13406.1 EDIAP_KXJ13406.1 24 1 0.5 3605 0.00911162 Peptidase M20 domain-containing protein 2 [Exaiptasia diaphana]
KXJ14833.1 EDIAP_KXJ14833.1 24 1 2.3 472 0.00148368 hypothetical protein AC249_AIPGENE28398 [Exaiptasia diaphana]
KXJ24614.1 EDIAP_KXJ24614.1 24 1 3.4 354 0.00148368 DNA repair protein RAD52-like [Exaiptasia diaphana]
KXJ14032.1 EDIAP_KXJ14032.1 23 1 1.1 848 0.00148368 SH3 domain-binding glutamic acid-rich-like protein 3 [Exaiptasia diaphana]
KXJ26715.1 EDIAP_KXJ26715.1 23 1 2.5 363 0.00148368 Glycine dehydrogenase (decarboxylating), mitochondrial [Exaiptasia diaphana]
KXJ18450.1 EDIAP_KXJ18450.1 22 1 1.6 555 0.00148368 Anamorsin-like [Exaiptasia diaphana]
KXJ05244.1 EDIAP_KXJ05244.1 21 1 4.2 239 0.00148368 hypothetical protein AC249_AIPGENE10130, partial [Exaiptasia diaphana]
Total protein records: 298  (+20 contaminants hidden)
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