Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD051329

SpeciesExaiptasia diaphana
TissueCyst structure
PRIDE accessionPXD051329
Statusreprocessed
Search engineComet 2026.01
Reference proteomeCnidoSite reference proteome
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins298
Peptides (q≤0.01)878
PSMs (q≤0.01)14764
reprocessed against the CnidoSite reference proteome
20 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
KXJ18773.1 EDIAP_KXJ18773.1 13 1 1 2147 0.00148368 Unconventional myosin-IXa [Exaiptasia diaphana]
KXJ26346.1 EDIAP_KXJ26346.1 13 1 2.8 320 0.00148368 hypothetical protein AC249_AIPGENE11611 [Exaiptasia diaphana]
KXJ08715.1 EDIAP_KXJ08715.1 12 1 1.4 878 0.00148368 Mucin-5B [Exaiptasia diaphana]
KXJ14614.1 EDIAP_KXJ14614.1 12 1 2.6 465 0.00148368 BTB/POZ domain-containing protein 16 [Exaiptasia diaphana]
KXJ16174.1 EDIAP_KXJ16174.1 12 1 1.9 625 0.00148368 Proton-coupled folate transporter [Exaiptasia diaphana]
KXJ22905.1 EDIAP_KXJ22905.1 12 1 2.7 603 0.00148368 Stromal interaction molecule 1 [Exaiptasia diaphana]
KXJ27653.1 EDIAP_KXJ27653.1 12 1 1.1 825 0.003663 Facilitated trehalose transporter Tret1 [Exaiptasia diaphana]
KXJ30128.1 EDIAP_KXJ30128.1 12 1 3.6 387 0.00148368 Retrovirus-related Pol polyprotein from transposon opus [Exaiptasia diaphana]
KXJ14423.1 EDIAP_KXJ14423.1 11 1 3.8 320 0.00148368 hypothetical protein AC249_AIPGENE27866 [Exaiptasia diaphana]
KXJ17179.1 EDIAP_KXJ17179.1 11 1 1.7 809 0.003663 hypothetical protein AC249_AIPGENE16241 [Exaiptasia diaphana]
KXJ18017.1 EDIAP_KXJ18017.1 11 1 4.2 214 0.003663 Ectin [Exaiptasia diaphana]
KXJ20423.1 EDIAP_KXJ20423.1 11 1 1.4 1110 0.00148368 B-cell lymphoma 3 protein-like [Exaiptasia diaphana]
KXJ28351.1 EDIAP_KXJ28351.1 11 1 11 181 0.00148368 Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1 [Exaiptasia diaphana]
KXJ29513.1 EDIAP_KXJ29513.1 11 1 4 347 0.00148368 Serine/threonine-protein kinase PINK1, mitochondrial [Exaiptasia diaphana]
KXJ04232.1 EDIAP_KXJ04232.1 10 1 2.1 817 0.00148368 Neuropilin-1 [Exaiptasia diaphana]
KXJ06469.1 EDIAP_KXJ06469.1 10 1 11.3 141 0.00148368 D-3-phosphoglycerate dehydrogenase [Exaiptasia diaphana]
KXJ08800.1 EDIAP_KXJ08800.1 10 1 3 430 0.00148368 UDP-glucuronosyltransferase 2A1 [Exaiptasia diaphana]
KXJ09410.1 EDIAP_KXJ09410.1 10 1 3.5 510 0.00148368 Lactadherin [Exaiptasia diaphana]
KXJ15380.1 EDIAP_KXJ15380.1 10 1 8.5 129 0.00148368 hypothetical protein AC249_AIPGENE11095 [Exaiptasia diaphana]
KXJ16971.1 EDIAP_KXJ16971.1 10 1 11 82 0.00148368 Transmembrane and ubiquitin-like domain-containing protein 2 [Exaiptasia diaphana]
KXJ16993.1 EDIAP_KXJ16993.1 10 1 8.3 121 0.00289017 Vitrin [Exaiptasia diaphana]
KXJ17626.1 EDIAP_KXJ17626.1 10 1 6.3 175 0.003663 Solute carrier family 15 member 4 [Exaiptasia diaphana]
KXJ19787.1 EDIAP_KXJ19787.1 10 1 2.3 488 0.00148368 Sulfatase-modifying factor 2 [Exaiptasia diaphana]
KXJ19804.1 EDIAP_KXJ19804.1 10 1 2.1 478 0.00148368 Glucose transporter type 1 [Exaiptasia diaphana]
KXJ20191.1 EDIAP_KXJ20191.1 10 1 1.6 774 0.00148368 hypothetical protein AC249_AIPGENE15952 [Exaiptasia diaphana]
Total protein records: 298  (+20 contaminants hidden)
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