Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD060643

SpeciesActinia fragacea
Tissuenematocysts, various tissues
PRIDE accessionPXD060643
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Actinia_tenebrosa.rep.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins4572
Peptides (q≤0.01)24717
PSMs (q≤0.01)130483
reprocessed against the CnidoSite reference proteome
15 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN8368_c0_g1 TRINITY_DN8368_c0_g1_i1.p1 65 16 49 351 0.0000713063
TRINITY_DN9280_c0_g1 TRINITY_DN9280_c0_g1_i1.p1 60 16 29.1 746 0.0000713063
TRINITY_DN3780_c0_g2 TRINITY_DN3780_c0_g2_i1.p1 58 16 83.1 154 0.0000713063
TRINITY_DN12509_c0_g1 TRINITY_DN12509_c0_g1_i1.p1 56 16 24.7 789 0.0000713063
TRINITY_DN8870_c0_g1 TRINITY_DN8870_c0_g1_i2.p1 56 16 27.3 746 0.0000713063
TRINITY_DN9731_c0_g1 TRINITY_DN9731_c0_g1_i3.p1 55 16 23.3 870 0.0000713063
TRINITY_DN8740_c0_g2 TRINITY_DN8740_c0_g2_i1.p1 53 16 30.6 568 0.0000713063
TRINITY_DN25151_c0_g1 TRINITY_DN25151_c0_g1_i1.p1 52 16 42.9 501 0.0000713063
TRINITY_DN40185_c0_g1 TRINITY_DN40185_c0_g1_i1.p1 52 16 30.3 597 0.0000713063
TRINITY_DN1438_c0_g1 TRINITY_DN1438_c0_g1_i1.p1 51 16 22.1 904 0.0000713063
TRINITY_DN33903_c0_g1 TRINITY_DN33903_c0_g1_i1.p1 45 16 20.8 828 0.0000713063
TRINITY_DN39401_c0_g1 TRINITY_DN39401_c0_g1_i1.p1 43 16 35.3 535 0.0000713063
TRINITY_DN29253_c0_g1 TRINITY_DN29253_c0_g1_i2.p1 40 16 35.6 492 0.0000713063
TRINITY_DN12940_c0_g1 TRINITY_DN12940_c0_g1_i1.p1 36 16 24.7 740 0.0000713063
TRINITY_DN7262_c0_g1 TRINITY_DN7262_c0_g1_i1.p1 35 16 30.8 590 0.0000713063
TRINITY_DN1403_c0_g1 TRINITY_DN1403_c0_g1_i11.p1 34 16 10.1 1965 0.0000713063
TRINITY_DN14408_c0_g1 TRINITY_DN14408_c0_g1_i1.p1 33 16 10.5 2063 0.0000713063
TRINITY_DN16800_c0_g1 TRINITY_DN16800_c0_g1_i1.p1 33 16 10 1914 0.0000713063
TRINITY_DN569_c0_g2 TRINITY_DN569_c0_g2_i1.p1 32 16 18.8 1044 0.0000713063
TRINITY_DN3101_c6_g1 TRINITY_DN3101_c6_g1_i1.p1 30 16 19.2 1166 0.0000713063
TRINITY_DN1925_c0_g1 TRINITY_DN1925_c0_g1_i16.p1 27 16 16.8 1032 0.0000713063
TRINITY_DN5106_c1_g2 TRINITY_DN5106_c1_g2_i1.p1 376 15 48 125 0.0000713063
TRINITY_DN9448_c0_g1 TRINITY_DN9448_c0_g1_i1.p1 206 15 56.9 195 0.0000713063
TRINITY_DN66_c1_g1 TRINITY_DN66_c1_g1_i6.p1 174 15 75.6 205 0.0000713063
TRINITY_DN37538_c0_g1 TRINITY_DN37538_c0_g1_i1.p1 171 15 48.3 377 0.0000713063
Total protein records: 4572  (+15 contaminants hidden)
Show: proteins per page
« First ‹ Previous 1… 9 10 11 12 13 14 15 … 183 Next › Last » of 183 pages
TOP