Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD060643

SpeciesActinia fragacea
Tissuenematocysts, various tissues
PRIDE accessionPXD060643
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Actinia_tenebrosa.rep.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins4572
Peptides (q≤0.01)24717
PSMs (q≤0.01)130483
reprocessed against the CnidoSite reference proteome
15 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN21460_c0_g1 TRINITY_DN21460_c0_g1_i2.p1 154 36 39.3 939 0.0000713063
TRINITY_DN31098_c0_g1 TRINITY_DN31098_c0_g1_i1.p1 207 35 23.5 1492 0.0000713063
TRINITY_DN819_c1_g1 TRINITY_DN819_c1_g1_i1.p1 131 35 35.6 863 0.0000713063
TRINITY_DN19485_c3_g3 TRINITY_DN19485_c3_g3_i2.p1 262 34 35.9 960 0.0000713063
TRINITY_DN598_c0_g2 TRINITY_DN598_c0_g2_i1.p1 216 34 53.8 626 0.0000713063
TRINITY_DN11412_c0_g1 TRINITY_DN11412_c0_g1_i2.p1 129 34 39 904 0.0000713063
TRINITY_DN48681_c0_g1 TRINITY_DN48681_c0_g1_i1.p1 112 34 26.1 1516 0.0000713063
TRINITY_DN5729_c4_g1 TRINITY_DN5729_c4_g1_i1.p1 90 34 26.2 1673 0.0000713063
TRINITY_DN3525_c1_g1 TRINITY_DN3525_c1_g1_i1.p1 402 33 47.3 647 0.0000713063
TRINITY_DN1062_c0_g3 TRINITY_DN1062_c0_g3_i4.p1 198 33 26.9 1109 0.0000713063
TRINITY_DN54901_c0_g1 TRINITY_DN54901_c0_g1_i1.p1 198 33 31.2 980 0.0000713063
TRINITY_DN17315_c0_g1 TRINITY_DN17315_c0_g1_i1.p1 94 33 34.7 1197 0.0000713063
TRINITY_DN54052_c0_g1 TRINITY_DN54052_c0_g1_i1.p1 73 33 30.3 1073 0.0000713063
TRINITY_DN29029_c0_g1 TRINITY_DN29029_c0_g1_i1.p1 405 32 63.4 543 0.0000713063
TRINITY_DN10304_c0_g1 TRINITY_DN10304_c0_g1_i3.p1 694 31 67.2 402 0.0000713063
TRINITY_DN11985_c0_g1 TRINITY_DN11985_c0_g1_i2.p1 49 31 5.9 4881 0.0000713063
TRINITY_DN1915_c0_g1 TRINITY_DN1915_c0_g1_i1.p1 477 30 62.7 359 0.0000713063
TRINITY_DN29274_c0_g1 TRINITY_DN29274_c0_g1_i1.p1 306 30 60.3 585 0.0000713063
TRINITY_DN138_c6_g1 TRINITY_DN138_c6_g1_i1.p1 258 30 20.4 1497 0.0000713063
TRINITY_DN6730_c0_g1 TRINITY_DN6730_c0_g1_i8.p1 158 30 41.2 772 0.0000713063
TRINITY_DN7826_c0_g2 TRINITY_DN7826_c0_g2_i1.p1 155 30 22.8 1588 0.0000713063
TRINITY_DN363_c2_g3 TRINITY_DN363_c2_g3_i1.p1 120 30 43.6 873 0.0000713063
TRINITY_DN4775_c1_g1 TRINITY_DN4775_c1_g1_i1.p1 109 30 16.1 2186 0.0000713063
TRINITY_DN6801_c0_g1 TRINITY_DN6801_c0_g1_i1.p1 95 30 27.8 1288 0.0000713063
TRINITY_DN18824_c0_g1 TRINITY_DN18824_c0_g1_i1.p1 374 29 49.6 361 0.0000713063
Total protein records: 4572  (+15 contaminants hidden)
Show: proteins per page
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