Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD060643

SpeciesActinia fragacea
Tissuenematocysts, various tissues
PRIDE accessionPXD060643
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Actinia_tenebrosa.rep.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins4572
Peptides (q≤0.01)24717
PSMs (q≤0.01)130483
reprocessed against the CnidoSite reference proteome
15 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN2710_c4_g1 TRINITY_DN2710_c4_g1_i4.p1 147 29 51.9 553 0.0000713063
TRINITY_DN17843_c0_g1 TRINITY_DN17843_c0_g1_i4.p1 56 29 14.8 2320 0.0000713063
TRINITY_DN1177_c3_g1 TRINITY_DN1177_c3_g1_i2.p1 227 28 54.3 488 0.0000713063
TRINITY_DN18814_c0_g1 TRINITY_DN18814_c0_g1_i1.p1 142 28 32.3 845 0.0000713063
TRINITY_DN1958_c0_g2 TRINITY_DN1958_c0_g2_i1.p1 46 28 7.6 4751 0.0000713063
TRINITY_DN7832_c0_g1 TRINITY_DN7832_c0_g1_i1.p1 268 27 45.2 629 0.0000713063
TRINITY_DN34806_c0_g1 TRINITY_DN34806_c0_g1_i1.p1 215 27 48.8 498 0.0000713063
TRINITY_DN132_c2_g1 TRINITY_DN132_c2_g1_i3.p1 155 27 64.6 412 0.0000713063
TRINITY_DN4923_c1_g1 TRINITY_DN4923_c1_g1_i1.p1 772 26 74.4 242 0.0000713063
TRINITY_DN1149_c0_g2 TRINITY_DN1149_c0_g2_i2.p1 291 26 50.6 439 0.0000713063
TRINITY_DN1632_c0_g1 TRINITY_DN1632_c0_g1_i4.p1 253 26 44 586 0.0000713063
TRINITY_DN1313_c2_g1 TRINITY_DN1313_c2_g1_i13.p1 205 26 25.5 968 0.0000713063
TRINITY_DN20387_c0_g1 TRINITY_DN20387_c0_g1_i1.p1 159 26 56.1 645 0.0000713063
TRINITY_DN9340_c0_g1 TRINITY_DN9340_c0_g1_i35.p1 127 26 32.5 711 0.0000713063
TRINITY_DN2700_c0_g1 TRINITY_DN2700_c0_g1_i6.p1 117 26 37.6 843 0.0000713063
TRINITY_DN4574_c0_g1 TRINITY_DN4574_c0_g1_i10.p1 102 26 23.3 1408 0.0000713063
TRINITY_DN560_c9_g1 TRINITY_DN560_c9_g1_i1.p1 85 26 39.5 593 0.0000713063
TRINITY_DN35377_c0_g1 TRINITY_DN35377_c0_g1_i1.p1 69 26 45.4 586 0.0000713063
TRINITY_DN632_c0_g2 TRINITY_DN632_c0_g2_i4.p1 48 26 23.4 1033 0.0000713063
TRINITY_DN13290_c0_g1 TRINITY_DN13290_c0_g1_i1.p1 356 25 60.4 475 0.0000713063
TRINITY_DN4190_c1_g1 TRINITY_DN4190_c1_g1_i7.p1 249 25 44.2 428 0.0000713063
TRINITY_DN5170_c0_g1 TRINITY_DN5170_c0_g1_i1.p1 93 25 25 1137 0.0000713063
TRINITY_DN341_c1_g1 TRINITY_DN341_c1_g1_i6.p1 88 25 12.6 2756 0.0000713063
TRINITY_DN58793_c0_g1 TRINITY_DN58793_c0_g1_i1.p1 60 25 26.1 1224 0.0000713063
TRINITY_DN52135_c0_g1 TRINITY_DN52135_c0_g1_i1.p1 44 25 17.3 2007 0.0000713063
Total protein records: 4572  (+15 contaminants hidden)
Show: proteins per page
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