Proteomic Analysis

Peptides and proteins identified by re-processing the raw mass-spectrometry data of every proteomic dataset with a single documented pipeline (Comet 2026.01 against the CnidoSite reference proteome plus cRAP contaminants, with Percolator target-decoy FDR control). Search parameters are dataset-specific and are shown in full for each dataset; peptides were mapped onto CnidoSite gene models, so every row links to its gene page.

Dataset
Contaminants

Dataset provenance & search parameters — PXD060643

SpeciesActinia fragacea
Tissuenematocysts, various tissues
PRIDE accessionPXD060643
Statusreprocessed
Search engineComet 2026.01
Reference proteome/mnt/sdb/jackie/cnidaria_omics/transcriptome_proteins/Actinia_tenebrosa.rep.pep
Enzymetrypsin
Missed cleavages2
Precursor tolerance10 ppm
Fragment tolerance0.02 Da
Fixed modificationC+57.021464
Variable modificationM+15.9949
Decoy strategyComet internal reversed (1:1)
FDR (PSM)0.01
Quantificationspectral counting (PSMs)
Proteins4572
Peptides (q≤0.01)24717
PSMs (q≤0.01)130483
reprocessed against the CnidoSite reference proteome
15 cRAP contaminant protein s (keratins, trypsin, serum albumin …) were identified in this dataset and are excluded from the table below. Tick “include cRAP contaminants” to display them.
Gene Protein PSMs Unique peptides Coverage (%) Length Best q-value Description
TRINITY_DN1207_c1_g3 TRINITY_DN1207_c1_g3_i1.p1 126 21 49.2 510 0.0000713063
TRINITY_DN1857_c1_g1 TRINITY_DN1857_c1_g1_i1.p1 108 21 21 1083 0.0000713063
TRINITY_DN2288_c0_g1 TRINITY_DN2288_c0_g1_i1.p1 105 21 43.1 411 0.0000713063
TRINITY_DN8299_c0_g1 TRINITY_DN8299_c0_g1_i4.p1 98 21 54.2 563 0.0000713063
TRINITY_DN40720_c0_g1 TRINITY_DN40720_c0_g1_i1.p1 78 21 49 537 0.0000713063
TRINITY_DN4010_c0_g1 TRINITY_DN4010_c0_g1_i7.p1 61 21 34 723 0.0000713063
TRINITY_DN17835_c0_g1 TRINITY_DN17835_c0_g1_i2.p1 59 21 35.2 654 0.0000713063
TRINITY_DN15242_c0_g1 TRINITY_DN15242_c0_g1_i1.p1 44 21 26 894 0.0000713063
TRINITY_DN6488_c0_g1 TRINITY_DN6488_c0_g1_i3.p1 310 20 44.6 509 0.0000713063
TRINITY_DN8403_c0_g1 TRINITY_DN8403_c0_g1_i1.p1 219 20 63.6 341 0.0000713063
TRINITY_DN6783_c0_g1 TRINITY_DN6783_c0_g1_i2.p1 156 20 23.2 1120 0.0000713063
TRINITY_DN41392_c0_g1 TRINITY_DN41392_c0_g1_i1.p1 129 20 61 418 0.0000713063
TRINITY_DN35692_c0_g1 TRINITY_DN35692_c0_g1_i1.p1 115 20 51.2 498 0.0000713063
TRINITY_DN1928_c0_g2 TRINITY_DN1928_c0_g2_i5.p1 109 20 46.7 415 0.0000713063
TRINITY_DN15226_c0_g1 TRINITY_DN15226_c0_g1_i1.p1 91 20 42.5 473 0.0000713063
TRINITY_DN728_c1_g1 TRINITY_DN728_c1_g1_i1.p1 84 20 25.2 591 0.0000713063
TRINITY_DN2169_c0_g2 TRINITY_DN2169_c0_g2_i1.p1 77 20 18.5 1159 0.0000713063
TRINITY_DN6720_c1_g2 TRINITY_DN6720_c1_g2_i1.p1 68 20 36.5 669 0.0000713063
TRINITY_DN8701_c0_g1 TRINITY_DN8701_c0_g1_i8.p1 64 20 42.2 538 0.0000713063
TRINITY_DN19151_c0_g1 TRINITY_DN19151_c0_g1_i2.p1 54 20 34.9 823 0.0000713063
TRINITY_DN33654_c0_g1 TRINITY_DN33654_c0_g1_i1.p1 48 20 28.6 976 0.0000713063
TRINITY_DN219_c1_g2 TRINITY_DN219_c1_g2_i1.p1 41 20 19 1280 0.0000713063
TRINITY_DN56312_c0_g1 TRINITY_DN56312_c0_g1_i1.p1 38 20 15 1483 0.0000713063
TRINITY_DN8894_c3_g1 TRINITY_DN8894_c3_g1_i1.p1 456 19 44.8 404 0.0000713063
TRINITY_DN4988_c2_g1 TRINITY_DN4988_c2_g1_i1.p1 317 19 59.7 310 0.0000713063
Total protein records: 4572  (+15 contaminants hidden)
Show: proteins per page
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