Single-cell Data

In this module, a brief summary of single-cell RNA-seq datasets are listed as follows.

Species · show all species
ClassSpeciesProjectStudy AccessionEmb/OrgStageNumber of CellsReferencesExplore
HexacoralliaAcropora milleporaPRJNA1223412SRP563749Whole adultsAdult tissues/organs28,73641094138Atlas · Markers

Why do only some datasets have an atlas? Showing all species → only Acropora millepora; this species has 1 dataset(s). This table indexes 1 datasets across 1 species; an interactive projection is provided for the 1 datasets whose source study deposited a processed UMAP embedding and a cell-type marker table. For the others CnidoSite gives the sample metadata, the BioProject/SRA links and the original reference, but cannot recompute an atlas from raw reads. Open the Cell Atlas →
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