A Cnidaria-specific core single-copy ortholog resource (CCO), built from the same 153-proteome OrthoFinder run that powers the gene-family pages, with the species × orthogroup presence/absence matrix released alongside it. Where BUSCO scores a genome against a curated lineage, this defines the core on CnidoSite's own taxonomic sampling and lets you re-threshold it.
Rows are the 153 proteomes in the OrthoFinder run, in class order by their full scientific name, with the five non-cnidarian outgroups last; columns are the 1,017 orthogroups in this tier, ordered by single-copy fraction and labelled with their consensus annotation. Each column head carries the orthogroup id, the accession its annotation came from (PTHR… PANTHER, PF… Pfam, GO:…, KEGG) and as much of the description as the head has room for; the full text is in the tooltip and in the readout above the grid. The view switches between the three matrices published in the download section; all three are derived from the same copy numbers, so they can never disagree with each other.
1,017 orthogroups left to right × 153 proteomes top to bottom, the same encoding as the table below, drawn at about 1px a column. The strip along the top of the grid is the share of proteomes that carry each orthogroup, so the tier's shape — which families are universally conserved, where it thins out — is visible at a glance. The outlined window is the part the table is showing; click or drag anywhere on the grid to jump the table there, or point at a cell to have the table read it out.
The full matrix is shown — every row and every gene. The page scrolls for the rest of the
proteomes; the gene axis is the wide one, so the wheel is set to ↕ down the page by
default and Shift (or the scrollbar, or the overview) pans across genes. Pointing at any
cell tints its row and its column and names both in the readout above. Hover any column head for
the full annotation, its source, the orthogroup id and its occupancy; hover any row label for the
genome's abbr1 code, its class and its presence count.
Slanted labels read more easily but take a column roughly as wide as the label is long
— on the extended tier that is 45,000px of table. Upright sets the same labels
bottom-to-top in a 12px column, about four times narrower, and is the default from the core tier
up for that reason.
935 of 1,017 orthogroups in this tier have a consensus annotation; the rest show their id in grey.
* marks a genome at BUSCO complete ≥90%. The matrices for every tier are in the download section.
