Functional Domain Search

Search every annotated genome in CnidoSite by protein domain, not just by gene ID. Enter an accession (IPR016024, PF12848, K13752, GO:0005615, PTHR19143) or a free-text term (kinase, Armadillo, homeobox). One query covers 148 annotated genomes.

InterProPfamKEGG pathwayGene OntologyPANTHER
Examples: IPR016024 PF12848 K13752 homeobox  ·  matching is exact on the identifier and partial on the description.

Found 12 gene–annotation pairs matching PF04717 across 148 genomes · 8268 ms.

Species with hits:HOLIG 10AAURI2 1PMIZI 1
SpeciesGene IDPfam termMatchSourceBrowser
AAURI2scaffold4089.g1.t1PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00001.G50741PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00001.G53847PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00580.G29988PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00823.G35854PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00504.G54994PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00001.G52508PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00001.G49374PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00001.G49992PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00001.G50389PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
HOLIGHOLI00001.G53568PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse
PMIZIc1928.g011.t1.p1PF04717Type VI secretion system/phage-baseplate injector OB domainInterproscanJBrowse

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