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This orthogroup contains 137 genes from 113 species. The functional annotation below is the consensus of the family's member genes — each term is reported with the number of member genes that carry it.
Support counts the member genes carrying the term. % of genes is that count over all 137 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR21196 | U7 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM10 | 122 / 137 | 89.1% | 100.0% of 122 | ≥80% support |
| Pfam | PF01423 | LSM | 121 / 137 | 88.3% | 100.0% of 121 | ≥80% support |
| GO | GO:0006398 Biological Process | mRNA 3'-end processing by stem-loop binding and cleavage | 122 / 137 | 89.1% | 100.0% of 122 | ≥80% support |
| GO | GO:0016604 Cellular Component | nuclear body | 122 / 137 | 89.1% | 100.0% of 122 | ≥80% support |
| GO | GO:0071208 Molecular Function | histone pre-mRNA DCP binding | 122 / 137 | 89.1% | 100.0% of 122 | ≥80% support |
| GO | GO:0071209 Molecular Function | U7 snRNA binding | 122 / 137 | 89.1% | 100.0% of 122 | ≥80% support |
| GO | GO:0071254 Cellular Component | cytoplasmic U snRNP body | 122 / 137 | 89.1% | 100.0% of 122 | ≥80% support |
| GO | GO:0003723 Molecular Function | RNA binding | 73 / 137 | 53.3% | 59.8% of 122 | ≥50% support |
| KEGG | K25591 | LSM10 — Messenger RNA biogenesis | 97 / 137 | 70.8% | 100.0% of 97 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Acropora microphthalma | amic_s0025.g102.t1 | XP_015759986.1 | PREDICTED: U7 snRNA-associated Sm-like protein LSm10 [Acropora digitifera] | Q8QZX5 U7 snRNA-associated Sm-like protein LSm10 OS=Mus musculus OX | JBrowse |
