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Support counts the member genes carrying the term. % of genes is that count over all 45 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| Pfam | PF04542 | Sigma70_r2 — Sigma-70 region 2 | 37 / 45 | 82.2% | 86.1% of 43 | ≥80% support |
| GO | GO:0003700 Molecular Function | DNA-binding transcription factor activity | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0006352 Biological Process | DNA-templated transcription initiation | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0006355 Biological Process | regulation of DNA-templated transcription | 43 / 45 | 95.6% | 100.0% of 43 | ≥80% support |
| GO | GO:0003677 Molecular Function | DNA binding | 37 / 45 | 82.2% | 86.1% of 43 | ≥80% support |
| PANTHER | PTHR30603 | RNA POLYMERASE SIGMA FACTOR RPO | 35 / 45 | 77.8% | 87.5% of 40 | ≥50% support |
| Pfam | PF00140 | Sigma70_r1_2 — Sigma-70 factor, region 1.2 | 33 / 45 | 73.3% | 76.7% of 43 | ≥50% support |
| Pfam | PF04539 | Sigma70_r3 — Sigma-70 region 3 | 33 / 45 | 73.3% | 76.7% of 43 | ≥50% support |
| Pfam | PF04545 | Sigma70_r4 — Sigma-70, region 4 | 32 / 45 | 71.1% | 74.4% of 43 | ≥50% support |
| GO | GO:0016987 Molecular Function | sigma factor activity | 35 / 45 | 77.8% | 81.4% of 43 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cassiopea xamachana | Cxam_g10693.t1 | MBN2490102.1 | RNA polymerase sigma factor RpoD [Planctomycetota bacterium] | P56835 RNA polymerase sigma factor SigA OS=Chlamydia muridarum (str | JBrowse |
| Cassiopea xamachana | Cxam_g16054.t1 | MBN2491251.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | P26683 RNA polymerase sigma factor SigA OS=Nostoc sp. (strain PCC 7 | JBrowse |
| Cassiopea xamachana | Cxam_g19232.t1 | MBN2492606.1 | orotidine-5'-phosphate decarboxylase [Planctomycetota bacterium] | B0K2E7 Orotidine 5'-phosphate decarboxylase OS=Thermoanaerobacter s | JBrowse |
| Cassiopea xamachana | Cxam_g21211.t1 | MBN2490795.1 | sigma-70 family RNA polymerase sigma factor [Planctomycetota bacterium] | P0A4I9 RNA polymerase sigma factor SigA OS=Streptococcus pneumoniae | JBrowse |
| Cassiopea xamachana | Cxam_g879.t1 | WP_170324475.1 | RNA polymerase sigma factor RpoD [Ruegeria arenilitoris] | D5AQI9 RNA polymerase sigma factor RpoD OS=Rhodobacter capsulatus ( | JBrowse |
