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Support counts the member genes carrying the term. % of genes is that count over all 40 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11933 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| Pfam | PF03054 | tRNA_Me_trans — tRNA methyl transferase HUP domain | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| Pfam | PF20259 | tRNA_Me_trans_M — tRNA methyl transferase PRC-barrel domain | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| Pfam | PF20258 | tRNA_Me_trans_C — Aminomethyltransferase beta-barrel domain | 26 / 40 | 65.0% | 92.9% of 28 | ≥50% support |
| GO | GO:0002143 Biological Process | tRNA wobble position uridine thiolation | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| GO | GO:0008033 Biological Process | tRNA processing | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| GO | GO:0016740 Molecular Function | transferase activity | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| GO | GO:0016783 Molecular Function | sulfurtransferase activity | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Cassiopea xamachana | Cxam_g1219.t1 | WP_170330041.1 | tRNA 2-thiouridine(34) synthase MnmA [Ruegeria arenilitoris] | Q5LST9 tRNA-specific 2-thiouridylase MnmA OS=Ruegeria pomeroyi (str | JBrowse |
| Cassiopea xamachana | Cxam_g25336.t1 | MBN2490223.1 | tRNA 2-thiouridine(34) synthase MnmA [Planctomycetota bacterium] | Q74A22 tRNA-specific 2-thiouridylase MnmA OS=Geobacter sulfurreduce | JBrowse |
