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Support counts the member genes carrying the term. % of genes is that count over all 40 members — the strict reading of “the whole family agrees”. % annotated is the same count over only those members for which this database has a prediction of that type, which shows how uniform the evidence is where evidence exists.
| Source | Term | Name / description | Support | % of genes | % annotated | Consistency |
|---|---|---|---|---|---|---|
| PANTHER | PTHR11933 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| Pfam | PF03054 | tRNA_Me_trans — tRNA methyl transferase HUP domain | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| Pfam | PF20259 | tRNA_Me_trans_M — tRNA methyl transferase PRC-barrel domain | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| Pfam | PF20258 | tRNA_Me_trans_C — Aminomethyltransferase beta-barrel domain | 26 / 40 | 65.0% | 92.9% of 28 | ≥50% support |
| GO | GO:0002143 Biological Process | tRNA wobble position uridine thiolation | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| GO | GO:0008033 Biological Process | tRNA processing | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| GO | GO:0016740 Molecular Function | transferase activity | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
| GO | GO:0016783 Molecular Function | sulfurtransferase activity | 27 / 40 | 67.5% | 96.4% of 28 | ≥50% support |
Column guide: Top NCBI-NR hit and Top UniProt hit are the closest characterised sequences found by homology search — they are not identifiers of the CnidoSite gene itself. Where a species has no Swiss-Prot hit above threshold the UniProt column is shown as –. Click a gene ID for its full annotation page.
| Species | Gene ID | Top NCBI-NR hit (accession) |
Top NCBI-NR hit description (source organism) |
Top UniProt hit (Swiss-Prot) |
Genome browser |
|---|---|---|---|---|---|
| Calvadosia cruxmelitensis | g113.t1 | MBV6644521.1 | SRPBCC family protein [Cyclobacteriaceae bacterium] | Q60700 Mitogen-activated protein kinase kinase kinase 12 OS=Mus mus | JBrowse |
| Cassiopea xamachana | Cxam_g1219.t1 | WP_170330041.1 | tRNA 2-thiouridine(34) synthase MnmA [Ruegeria arenilitoris] | Q5LST9 tRNA-specific 2-thiouridylase MnmA OS=Ruegeria pomeroyi (str | JBrowse |
| Cassiopea xamachana | Cxam_g25336.t1 | MBN2490223.1 | tRNA 2-thiouridine(34) synthase MnmA [Planctomycetota bacterium] | Q74A22 tRNA-specific 2-thiouridylase MnmA OS=Geobacter sulfurreduce | JBrowse |
| Hydra oligactis | HOLI00001.G50849 | WP_095157280.1 | MULTISPECIES: tRNA 2-thiouridine(34) synthase MnmA [unclassified Pseudomonas] | Q1IBE4 tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas entomophil | JBrowse |
| Hydra oligactis | HOLI00002.G20205 | MBA4241106.1 | tRNA 2-thiouridine(34) synthase MnmA [Sphingobacteriaceae bacterium] | Q11UP4 tRNA-specific 2-thiouridylase MnmA OS=Cytophaga hutchinsonii | JBrowse |
| Hydra oligactis | HOLI00014.G10096 | WP_105259411.1 | tRNA 2-thiouridine(34) synthase MnmA [Rhodoferax sp. TS-BS-61-7] | Q21RZ7 tRNA-specific 2-thiouridylase MnmA OS=Albidiferax ferrireduc | JBrowse |
| Hydra oligactis | HOLI00014.G10097 | MBX9816737.1 | tRNA 2-thiouridine(34) synthase MnmA [Burkholderiaceae bacterium] | Q122U9 tRNA-specific 2-thiouridylase MnmA OS=Polaromonas sp. (strai | JBrowse |
| Hydra viridissima | BRAKERKREP00000023377.1 | WP_086065842.1 | tRNA 2-thiouridine(34) synthase MnmA [Bordetella genomosp. 8] | A9IQK6 tRNA-specific 2-thiouridylase MnmA OS=Bordetella petrii (str | JBrowse |
| Hydra viridissima | g20936.t1.1 | none | – | JBrowse | |
| Leptoseris scabra | ANN35127-RA | CZX90717.1 | tRNA-specific 2-thiouridylase mnmA [Enterobacter ludwigii] | Q1IBE4 tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas entomophil | JBrowse |
| Montipora grisea | ANN20905-RA | HIE02974.1 | tRNA 2-thiouridine(34) synthase MnmA [Thiotrichaceae bacterium] | A1STI9 tRNA-specific 2-thiouridylase MnmA OS=Psychromonas ingrahami | JBrowse |
| Montipora grisea | ANN22397-RA | KAI3490793.1 | hypothetical protein L1887_44955 [Cichorium endivia] | Q9I0K9 Adenylosuccinate lyase OS=Pseudomonas aeruginosa (strain ATC | JBrowse |
| Montipora grisea | ANN23909-RA | MBY8975793.1 | tRNA 2-thiouridine(34) synthase MnmA [Coraliihabitans acroporae] | A1B9H0 tRNA-specific 2-thiouridylase MnmA OS=Paracoccus denitrifica | JBrowse |
| Montipora grisea | ANN27367-RA | PCJ24947.1 | tRNA 2-thiouridine(34) synthase MnmA [Rickettsiales bacterium] | A8EZE8 tRNA-specific 2-thiouridylase MnmA OS=Rickettsia canadensis | JBrowse |
| Montipora grisea | ANN28233-RA | WP_071595110.1 | tRNA 2-thiouridine(34) synthase MnmA [Hymenobacter aerophilus] | B3ETH8 tRNA-specific 2-thiouridylase MnmA OS=Amoebophilus asiaticus | JBrowse |
| Montipora grisea | ANN29032-RA | GGG31764.1 | tRNA-specific 2-thiouridylase MnmA [Dokdonia pacifica] | A0M3J2 tRNA-specific 2-thiouridylase MnmA OS=Christiangramia forset | JBrowse |
| Montipora grisea | ANN30139-RA | WP_094985698.1 | tRNA 2-thiouridine(34) synthase MnmA [Cellvibrio mixtus] | A6V4G0 tRNA-specific 2-thiouridylase MnmA OS=Pseudomonas paraerugin | JBrowse |
| Montipora grisea | ANN30489-RA | MCG8360148.1 | tRNA 2-thiouridine(34) synthase MnmA [Kiloniellales bacterium] | B6ISD0 tRNA-specific 2-thiouridylase MnmA OS=Rhodospirillum centenu | JBrowse |
| Montipora grisea | ANN30532-RA | WP_155139119.1 | MULTISPECIES: tRNA 2-thiouridine(34) synthase MnmA [Alphaproteobacteria] | Q5LST9 tRNA-specific 2-thiouridylase MnmA OS=Ruegeria pomeroyi (str | JBrowse |
| Montipora grisea | ANN31628-RA | HCD47421.1 | tRNA 2-thiouridine(34) synthase MnmA [Cryomorphaceae bacterium] | A6H0G9 tRNA-specific 2-thiouridylase MnmA OS=Flavobacterium psychro | JBrowse |
